4930463O16Rik Gene Detail

Summary

• Symbol
  4930463O16Rik
• Name
  RIKEN cDNA 4930463O16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923054
  NCBI Gene: 75804
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:84324157-84333540 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.49 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923054	lncRNA gene	Chr10:84322989-84333753 (+)
129S1/SvImJ	ENSMUSG00200050606	lncRNA gene	Chr10:80814951-80824093 (+)
A/J	ENSMUSG00195050817	lncRNA gene	Chr10:81249656-81258799 (+)
AKR/J	ENSMUSG00220049594	lncRNA gene	Chr10:80859226-80868369 (+)
BALB/cJ	ENSMUSG00180053217	lncRNA gene	Chr10:81259939-81269082 (+)
C3H/HeJ	ENSMUSG00175052575	lncRNA gene	Chr10:81135903-81145045 (+)
C57BL/6NJ	ENSMUSG00215053422	lncRNA gene	Chr10:80812184-80821327 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004657	lincRNA gene	Chr10:78285457-78294396 (+)
CAST/EiJ	ENSTCUG00005052242	lncRNA gene	Chr10:80581051-80590010 (+)
CBA/J	ENSMUSG00210049980	lncRNA gene	Chr10:80986614-80995756 (+)
DBA/2J	ENSMUSG00185053917	lncRNA gene	Chr10:81196127-81205269 (+)
FVB/NJ	ENSMUSG00205051135	lncRNA gene	Chr10:80913732-80922875 (+)
JF1/MsJ	ENSUMUG00000024349	lncRNA gene	Chr10:82575464-82584689 (+)
LP/J	ENSMUSG00230018795	lncRNA gene	Chr10:83098434-83107576 (+)
NOD/ShiLtJ	ENSMUSG00190052915	lncRNA gene	Chr10:81242637-81251779 (+)
NZO/HlLtJ	ENSMUSG00225053876	lncRNA gene	Chr10:87369760-87378988 (+)
PWK/PhJ	ENSLUMG00010051658	lncRNA gene	Chr10:80875734-80884935 (+)
SPRET/EiJ	ENSMSPG00010032741	lncRNA gene	Chr10:82291621-82300812 (+)
WSB/EiJ	ENSIUOG00005051375	lncRNA gene	Chr10:80936678-80945852 (+)

Homology

• Gene Tree
  4930463O16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotypes from 1 allele in 1 genetic background
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving 4930463O16Rik
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a null allele exhibit normal fertility, however males show reduced sperm concentrations, increase in the percentage of motile and progressive spermatozoa, and sperm tail abnormalities.

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000020033 (Evidence)
• NCBI Gene
  75804

Representative Sequences			Length	Strain/Species
genomic	75804	NCBI Gene Model | MGI Sequence Detail	9384	C57BL/6J
transcript	NR_108059	RefSeq | MGI Sequence Detail	2329	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:328509 Chadourne M, et al., Structural and Functional Characterization of a Testicular Long Non-coding RNA (4930463O16Rik) Identified in the Meiotic Arrest of the Mouse Topaz1 (-/-) Testes. Front Cell Dev Biol. 2021;9:700290

TSS for 4930463O16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94889	Chr10:84324154-84324160 (+)	0 bp