4930431F12Rik Gene Detail

Summary

• Symbol
  4930431F12Rik
• Name
  RIKEN cDNA 4930431F12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923033
  NCBI Gene: 75783
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:45123543-45136147 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 24.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  441 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923033	lncRNA gene	Chr5:45123525-45136147 (+)
129S1/SvImJ	ENSMUSG00200001629	lncRNA gene	Chr5:40645545-40658174 (+)
A/J	ENSMUSG00195030010	lncRNA gene	Chr5:40035748-40048375 (+)
AKR/J	ENSMUSG00220002592	lncRNA gene	Chr5:40099264-40111890 (+)
BALB/cJ	ENSMUSG00180026679	lncRNA gene	Chr5:39863917-39876542 (+)
C3H/HeJ	ENSMUSG00175016447	lncRNA gene	Chr5:41836746-41849369 (+)
C57BL/6NJ	ENSMUSG00215001820	lncRNA gene	Chr5:40575074-40587678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024772	lncRNA gene	Chr5:39975812-39988556 (+)
CBA/J	ENSMUSG00210024838	lncRNA gene	Chr5:40796437-40809064 (+)
DBA/2J	ENSMUSG00185001661	lncRNA gene	Chr5:42674637-42687248 (+)
FVB/NJ	ENSMUSG00205020771	lncRNA gene	Chr5:39591845-39604468 (+)
JF1/MsJ	ENSUMUG00000002911	lncRNA gene	Chr5:47255044-47267766 (+)
LP/J	ENSMUSG00230003049	lncRNA gene	Chr5:47330182-47342804 (+)
NOD/ShiLtJ	ENSMUSG00190003421	lncRNA gene	Chr5:39871183-39883805 (+)
NZO/HlLtJ	ENSMUSG00225028521	lncRNA gene	Chr5:52479393-52492012 (+)
PWK/PhJ	ENSLUMG00010023126	lncRNA gene	Chr5:39901443-39914044 (+)
SPRET/EiJ	ENSMSPG00010013556	lncRNA gene	Chr5:41227733-41242200 (+)
WSB/EiJ	ENSIUOG00005020553	lncRNA gene	Chr5:42749958-42762512 (+)

Homology

• Gene Tree
  4930431F12Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving 4930431F12Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000062496 (Evidence)
• NCBI Gene
  75783

Representative Sequences			Length	Strain/Species
genomic	75783	NCBI Gene Model | MGI Sequence Detail	12605	C57BL/6J
transcript	NR_073013	RefSeq | MGI Sequence Detail	2262	C57BL/6
polypeptide	Q9D5J7	UniProt | EBI | MGI Sequence Detail	142	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 29

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707