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Egfem1 Gene Detail
Summary
  • Symbol
    Egfem1
  • Name
    EGF-like and EMI domain containing 1
  • Synonyms
    6130401L20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922990
    NCBI Gene: 75740
  • Alliance
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:29136172-29745358 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 12.57 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4115 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922990
protein coding gene Chr3:29135695-29831923 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027119
protein coding gene Chr3:26505005-27142073 (+)
A/J MGP_AJ_G0027079
protein coding gene Chr3:26221671-26827298 (+)
AKR/J MGP_AKRJ_G0027048
protein coding gene Chr3:26609851-27214192 (+)
BALB/cJ MGP_BALBcJ_G0027091
protein coding gene Chr3:25900074-26509319 (+)
C3H/HeJ MGP_C3HHeJ_G0026833
protein coding gene Chr3:26649183-27262758 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027537
protein coding gene Chr3:27946785-28619508 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024898
protein coding gene Chr3:24209888-24772307 (+)
CAST/EiJ MGP_CASTEiJ_G0026287
protein coding gene Chr3:26503405-27111825 (+)
CBA/J MGP_CBAJ_G0026811
protein coding gene Chr3:28680448-29357426 (+)
DBA/2J MGP_DBA2J_G0026945
protein coding gene Chr3:25789680-26389623 (+)
FVB/NJ MGP_FVBNJ_G0026913
protein coding gene Chr3:25255749-25843428 (+)
LP/J MGP_LPJ_G0027056
protein coding gene Chr3:27182924-27814508 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026933
protein coding gene Chr3:31241843-31923679 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027596
protein coding gene Chr3:26344444-26967289 (+)
PWK/PhJ MGP_PWKPhJ_G0026020
protein coding gene Chr3:25280183-25880198 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025832
protein coding gene Chr3:25832605-26460759 (+)
WSB/EiJ MGP_WSBEiJ_G0026361
protein coding gene Chr3:26390607-27031024 (+)



Homology
more
  • Human Ortholog
    EGFEM1P, EGF like and EMI domain containing 1, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    EGFEM1P, EGF like and EMI domain containing 1, pseudogene
  • Synonyms
    C3orf50, NCRNA00259
  • Links
    NCBI Gene ID: 93556
    UniProt: Q0D2K5

  • Chr Location
    3q26.2; chr3:168249522-168830599 (+)  GRCh38

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063600 Ensembl Gene Model | MGI Sequence Detail 609187 C57BL/6J ±  kb
transcript ENSMUST00000119598 Ensembl | MGI Sequence Detail 2687 Not Applicable  
polypeptide ENSMUSP00000112943 Ensembl | MGI Sequence Detail 590 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:324606 La Manno G, et al., Molecular architecture of the developing mouse brain. Nature. 2021 Aug;596(7870):92-96

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/19/2023
MGI 6.22
The Jackson Laboratory