4933415A04Rik Gene Detail

Summary

• Symbol
  4933415A04Rik
• Name
  RIKEN cDNA 4933415A04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922977
  NCBI Gene: 75727
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:43477867-43479875 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 25.81 cM, cytoband B1.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922977	lncRNA gene	Chr11:43477867-43479875 (+)
129S1/SvImJ	ENSMUSG00200007298	lncRNA gene	Chr11:40545688-40547698 (+)
A/J	ENSMUSG00195007468	lncRNA gene	Chr11:40498007-40500020 (+)
AKR/J	ENSMUSG00220003305	lncRNA gene	Chr11:40701786-40703796 (+)
BALB/cJ	ENSMUSG00180001768	lncRNA gene	Chr11:40490082-40492095 (+)
C3H/HeJ	ENSMUSG00175003924	lncRNA gene	Chr11:40491598-40493611 (+)
C57BL/6NJ	ENSMUSG00215010270	lncRNA gene	Chr11:40417236-40419248 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016225	protein coding gene	Chr11:38805250-38807288 (+)
CAST/EiJ	ENSTCUG00005013116	lncRNA gene	Chr11:40227227-40229205 (+)
CBA/J	ENSMUSG00210006786	lncRNA gene	Chr11:40380829-40382840 (+)
DBA/2J	ENSMUSG00185010307	lncRNA gene	Chr11:40573167-40575175 (+)
FVB/NJ	ENSMUSG00205012296	lncRNA gene	Chr11:40505128-40507137 (+)
JF1/MsJ	ENSUMUG00000043122	lncRNA gene	Chr11:40784133-40786133 (+)
LP/J	ENSMUSG00230034721	lncRNA gene	Chr11:41710007-41712016 (+)
NOD/ShiLtJ	ENSMUSG00190007452	lncRNA gene	Chr11:40603378-40605390 (+)
NZO/HlLtJ	ENSMUSG00225036421	lncRNA gene	Chr11:43667281-43669291 (+)
PWK/PhJ	ENSLUMG00010007389	lncRNA gene	Chr11:40375830-40377841 (+)
SPRET/EiJ	ENSMSPG00010002275	lncRNA gene	Chr11:40964128-40966137 (+)
WSB/EiJ	ENSIUOG00005002107	lncRNA gene	Chr11:40367216-40369224 (+)

Homology

• Gene Tree
  4933415A04Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000045877 (Evidence)
• NCBI Gene
  75727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045877	Ensembl Gene Model | MGI Sequence Detail	2009	C57BL/6J
transcript	ENSMUST00000056256	Ensembl | MGI Sequence Detail	2009	Not Applicable
polypeptide	Q9D443	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933415A04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101000	Chr11:43477895-43477899 (+)	30 bp