2310058D17Rik Gene Detail

Summary

• Symbol
  2310058D17Rik
• Name
  RIKEN cDNA 2310058D17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922944
  NCBI Gene: 75694
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:58856574-58869542 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 36.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  474 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922944	lncRNA gene	Chr11:58856574-58869542 (-)
129S1/SvImJ	ENSMUSG00200037483	lncRNA gene	Chr11:55863686-55875992 (-)
A/J	ENSMUSG00195043852	lncRNA gene	Chr11:55782286-55794633 (-)
AKR/J	ENSMUSG00220050881	lncRNA gene	Chr11:55959909-55972216 (-)
BALB/cJ	ENSMUSG00180051054	lncRNA gene	Chr11:55879920-55892226 (-)
C3H/HeJ	ENSMUSG00175049400	lncRNA gene	Chr11:55817495-55829837 (-)
C57BL/6NJ	ENSMUSG00215039489	lncRNA gene	Chr11:55647424-55659758 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013310	unclassified non-coding RNA gene	Chr11:53779659-53792417 (-)
CAST/EiJ	ENSTCUG00005047355	lncRNA gene	Chr11:55373020-55385330 (-)
CBA/J	ENSMUSG00210042304	lncRNA gene	Chr11:55668862-55681206 (-)
DBA/2J	ENSMUSG00185045822	lncRNA gene	Chr11:55853810-55866156 (-)
FVB/NJ	ENSMUSG00205051620	lncRNA gene	Chr11:55722489-55734832 (-)
JF1/MsJ	ENSUMUG00000052050	lncRNA gene	Chr11:56210418-56222752 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190052526	lncRNA gene	Chr11:55922399-55934707 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035841	lncRNA gene	Chr11:55678284-55690612 (-)
SPRET/EiJ	ENSMSPG00010042744	lncRNA gene	Chr11:56447865-56460296 (-)
WSB/EiJ	ENSIUOG00005039824	lncRNA gene	Chr11:55720789-55733077 (-)

Homology

• Gene Tree
  2310058D17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  8
• Genomic Mutations
  1 involving 2310058D17Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  15

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000085379 (Evidence)
• NCBI Gene
  75694

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085379	Ensembl Gene Model | MGI Sequence Detail	12969	C57BL/6J
transcript	ENSMUST00000131221	Ensembl | MGI Sequence Detail	3232	Not Applicable

Molecular
Reagents

• All nucleic 15

  cDNA 15

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310058D17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108184	Chr11:58868836-58868891 (-)	678 bp