1700016B01Rik Gene Detail

Summary

• Symbol
  1700016B01Rik
• Name
  RIKEN cDNA 1700016B01 gene
• Synonyms
  Gm42491

• Feature Type
  lncRNA gene
• IDs
  MGI:1922890
  NCBI Gene: 75640
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:112304093-112313113 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  384 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922890	lncRNA gene	Chr5:112304085-112324416 (+)
129S1/SvImJ	ENSMUSG00200023516	lncRNA gene	Chr5:106052165-106061115 (+)
A/J	ENSMUSG00195042410	lncRNA gene	Chr5:105554089-105563089 (+)
AKR/J	ENSMUSG00220051712	lncRNA gene	Chr5:105071495-105080449 (+)
BALB/cJ	ENSMUSG00180049347	lncRNA gene	Chr5:105695521-105704467 (+)
C3H/HeJ	ENSMUSG00175049381	lncRNA gene	Chr5:107683478-107692498 (+)
C57BL/6NJ	ENSMUSG00215034473	lncRNA gene	Chr5:105702527-105711522 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006148	lincRNA gene	Chr5:105085077-105094140 (+)
CAST/EiJ	ENSTCUG00005035115	lncRNA gene	Chr5:104884194-104893326 (+)
CBA/J	ENSMUSG00210047306	lncRNA gene	Chr5:106435567-106444587 (+)
DBA/2J	ENSMUSG00185047794	lncRNA gene	Chr5:109464098-109473093 (+)
FVB/NJ	ENSMUSG00205052089	lncRNA gene	Chr5:105333240-105342187 (+)
JF1/MsJ	ENSUMUG00000053107	lncRNA gene	Chr5:112322843-112331800 (+)
LP/J	ENSMUSG00230049690	lncRNA gene	Chr5:113590523-113599473 (+)
NOD/ShiLtJ	ENSMUSG00190049894	lncRNA gene	Chr5:105369300-105378246 (+)
NZO/HlLtJ	ENSMUSG00225025901	lncRNA gene	Chr5:121220288-121229283 (+)
PWK/PhJ	ENSLUMG00010038362	lncRNA gene	Chr5:104232610-104241476 (+)
SPRET/EiJ	ENSMSPG00010047019	lncRNA gene	Chr5:107490590-107499671 (+)
WSB/EiJ	ENSIUOG00005045454	lncRNA gene	Chr5:108076627-108085642 (+)

Homology

• Gene Tree
  1700016B01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700016B01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000104538 (Evidence)
• NCBI Gene
  75640

Representative Sequences			Length	Strain/Species
genomic	75640	NCBI Gene Model | MGI Sequence Detail	9021	C57BL/6J
transcript	NR_166436	RefSeq | MGI Sequence Detail	283	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662628

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700016B01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47949	Chr5:112304088-112304097 (+)	0 bp
Tssr47950	Chr5:112304099-112304106 (+)	10 bp