1700028D13Rik Gene Detail

Summary

• Symbol
  1700028D13Rik
• Name
  RIKEN cDNA 1700028D13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922819
  NCBI Gene: 75569
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:112354629-112357868 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922819	lncRNA gene	Chr5:112354588-112357895 (+)
129S1/SvImJ	ENSMUSG00200023532	lncRNA gene	Chr5:106096075-106099310 (+)
A/J	ENSMUSG00195042454	lncRNA gene	Chr5:105604634-105607875 (+)
AKR/J	ENSMUSG00220051722	lncRNA gene	Chr5:105115413-105118648 (+)
BALB/cJ	ENSMUSG00180049373	lncRNA gene	Chr5:105746065-105749306 (+)
C3H/HeJ	ENSMUSG00175049395	lncRNA gene	Chr5:107727571-107730812 (+)
C57BL/6NJ	ENSMUSG00215034556	lncRNA gene	Chr5:105753041-105756282 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006149	lincRNA gene	Chr5:105131281-105134528 (+)
CAST/EiJ	ENSTCUG00005035132	lncRNA gene	Chr5:104928628-104931904 (+)
CBA/J	ENSMUSG00210047328	lncRNA gene	Chr5:106479660-106482901 (+)
DBA/2J	ENSMUSG00185047830	lncRNA gene	Chr5:109514873-109518120 (+)
FVB/NJ	ENSMUSG00205052106	lncRNA gene	Chr5:105383805-105387046 (+)
JF1/MsJ	ENSUMUG00000053129	lncRNA gene	Chr5:112366831-112370113 (+)
LP/J	ENSMUSG00230049686	lncRNA gene	Chr5:113634424-113637659 (+)
NOD/ShiLtJ	ENSMUSG00190049926	lncRNA gene	Chr5:105419866-105423107 (+)
NZO/HlLtJ	ENSMUSG00225025896	lncRNA gene	Chr5:121270787-121274028 (+)
PWK/PhJ	ENSLUMG00010038713	lncRNA gene	Chr5:104276425-104279704 (+)
SPRET/EiJ	ENSMSPG00010047206	lncRNA gene	Chr5:107536156-107539447 (+)
WSB/EiJ	ENSIUOG00005045484	lncRNA gene	Chr5:108120672-108123913 (+)

Homology

• Gene Tree
  1700028D13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700028D13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2

• Ensembl
  ENSMUSG00000101683 (Evidence)
• NCBI Gene
  75569

Representative Sequences			Length	Strain/Species
genomic	75569	NCBI Gene Model | MGI Sequence Detail	3240	C57BL/6J
transcript	NR_045377	RefSeq | MGI Sequence Detail	716	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 1700028D13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47952	Chr5:112354624-112354647 (+)	7 bp
Tssr47953	Chr5:112354652-112354659 (+)	27 bp