1700016J18Rik Gene Detail

Summary

• Symbol
  1700016J18Rik
• Name
  RIKEN cDNA 1700016J18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922811
  NCBI Gene: 75561
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:41894150-41905105 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  545 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922811	lncRNA gene	Chr10:41893941-41905315 (+)
129S1/SvImJ	ENSMUSG00200009248	lncRNA gene	Chr10:38780567-38781191 (+)
A/J	ENSMUSG00195019254	lncRNA gene	Chr10:39055743-39056372 (+)
AKR/J	ENSMUSG00220027663	lncRNA gene	Chr10:38732214-38732843 (+)
BALB/cJ	ENSMUSG00180016655	lncRNA gene	Chr10:39140840-39141469 (+)
C3H/HeJ	ENSMUSG00175012552	lncRNA gene	Chr10:38935091-38935720 (+)
C57BL/6NJ	ENSMUSG00215010227	lncRNA gene	Chr10:38684416-38685045 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029497	lncRNA gene	Chr10:39131123-39131752 (+)
CBA/J	ENSMUSG00210026213	lncRNA gene	Chr10:38828577-38829206 (+)
DBA/2J	ENSMUSG00185007776	lncRNA gene	Chr10:38981181-38981810 (+)
FVB/NJ	ENSMUSG00205015390	lncRNA gene	Chr10:38896393-38897022 (+)
JF1/MsJ	ENSUMUG00000038689	lncRNA gene	Chr10:38766330-38766954 (+)
LP/J	ENSMUSG00230006363	lncRNA gene	Chr10:40770391-40771015 (+)
NOD/ShiLtJ	ENSMUSG00190035926	lncRNA gene	Chr10:39109350-39109979 (+)
NZO/HlLtJ	ENSMUSG00225019071	lncRNA gene	Chr10:45074171-45074800 (+)
PWK/PhJ	ENSLUMG00010008156	lncRNA gene	Chr10:38889736-38890360 (+)
SPRET/EiJ	ENSMSPG00010021448	lncRNA gene	Chr10:39917848-39918477 (+)
WSB/EiJ	ENSIUOG00005015699	lncRNA gene	Chr10:38659679-38660303 (+)

Homology

• Gene Tree
  1700016J18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700016J18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  4

• Ensembl
  ENSMUSG00000111103 (Evidence)
• NCBI Gene
  75561

Representative Sequences			Length	Strain/Species
genomic	75561	NCBI Gene Model | MGI Sequence Detail	10956	C57BL/6J
transcript	AK006037	GenBank | ENA | DDBJ | MGI Sequence Detail	250	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700016J18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93075	Chr10:41894170-41894199 (+)	35 bp