1700016K05Rik Gene Detail

Summary

• Symbol
  1700016K05Rik
• Name
  RIKEN cDNA 1700016K05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922794
  NCBI Gene: 102639882
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:67021451-67027480 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  358 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922794	lncRNA gene	Chr17:67020560-67027504 (+)
129S1/SvImJ	ENSMUSG00200039455	lncRNA gene	Chr17:62362048-62368091 (+)
A/J	ENSMUSG00195019821	lncRNA gene	Chr17:63704356-63710399 (+)
AKR/J	ENSMUSG00220018877	lncRNA gene	Chr17:62785101-62791132 (+)
BALB/cJ	ENSMUSG00180021493	lncRNA gene	Chr17:63441661-63447704 (+)
C3H/HeJ	ENSMUSG00175032580	lncRNA gene	Chr17:62749188-62755231 (+)
C57BL/6NJ	ENSMUSG00215035028	lncRNA gene	Chr17:62410004-62416035 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027359	lncRNA gene	Chr17:63353797-63359803 (+)
CBA/J	ENSMUSG00210031321	lncRNA gene	Chr17:62549098-62555141 (+)
DBA/2J	ENSMUSG00185023466	lncRNA gene	Chr17:65393563-65399606 (+)
FVB/NJ	ENSMUSG00205018829	lncRNA gene	Chr17:63168175-63174219 (+)
JF1/MsJ	ENSUMUG00000043079	lncRNA gene	Chr17:65057579-65063561 (+)
LP/J	ENSMUSG00230017122	lncRNA gene	Chr17:66380278-66386321 (+)
NOD/ShiLtJ	ENSMUSG00190042324	lncRNA gene	Chr17:62528010-62534053 (+)
NZO/HlLtJ	ENSMUSG00225026199	lncRNA gene	Chr17:68655428-68661439 (+)
PWK/PhJ	ENSLUMG00010030545	lncRNA gene	Chr17:62343147-62349132 (+)
SPRET/EiJ	ENSMSPG00010018188	lncRNA gene	Chr17:62696745-62702922 (+)
WSB/EiJ	ENSIUOG00005034231	lncRNA gene	Chr17:63400091-63406133 (+)

Homology

• Gene Tree
  1700016K05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000114563 (Evidence)
• NCBI Gene
  102639882

Representative Sequences			Length	Strain/Species
genomic	102639882	NCBI Gene Model | MGI Sequence Detail	6030	C57BL/6J
transcript	NR_151453	RefSeq | MGI Sequence Detail	384	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700016K05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145609	Chr17:67021463-67021486 (+)	24 bp