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Garin5a Gene Detail
Summary
  • Symbol
    Garin5a
  • Name
    golgi associated RAB2 interactor 5A
  • Synonyms
    0610007G24Rik, 1700021N13Rik, 1700021P22Rik, Fam71e1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922788
    NCBI Gene: 75538
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:44146005-44150910 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 28.83 cM, cytoband B2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    83 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922788
 protein coding gene Chr7:44145923-44153690 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032165
 protein coding gene Chr7:44670159-44675393 (+)
A/J MGP_AJ_G0032144
 protein coding gene Chr7:43852908-43857815 (+)
AKR/J MGP_AKRJ_G0032080
 protein coding gene Chr7:45055423-45060536 (+)
BALB/cJ MGP_BALBcJ_G0032156
 protein coding gene Chr7:43848994-43853904 (+)
C3H/HeJ MGP_C3HHeJ_G0031872
 protein coding gene Chr7:45546368-45552460 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032648
 protein coding gene Chr7:46928201-46933108 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029662
 protein coding gene Chr7:46437749-46443154 (+)
CAST/EiJ MGP_CASTEiJ_G0031200
 protein coding gene Chr7:36923354-36928282 (+)
CBA/J MGP_CBAJ_G0031836
 protein coding gene Chr7:48455630-48463035 (+)
DBA/2J MGP_DBA2J_G0031994
 protein coding gene Chr7:43526393-43532142 (+)
FVB/NJ MGP_FVBNJ_G0031945
 protein coding gene Chr7:43266003-43270452 (+)
LP/J MGP_LPJ_G0032072
 protein coding gene Chr7:45352918-45357837 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031982
 protein coding gene Chr7:47201480-47208144 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032664
 protein coding gene Chr7:44271887-44276799 (+)
PWK/PhJ MGP_PWKPhJ_G0030923
 protein coding gene Chr7:36874827-36879804 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030760
 protein coding gene Chr7:32279986-32284846 (+)
WSB/EiJ MGP_WSBEiJ_G0031317
 protein coding gene Chr7:44734289-44739185 (+)



Homology
more
  • Human Ortholog
    GARIN5A, golgi associated RAB2 interactor 5A
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GARIN5A, golgi associated RAB2 interactor 5A
  • Synonyms
    FAM71E1, GARIL5
  • Links
    NCBI Gene ID: 112703
    neXtProt AC: NX_Q6IPT2
    UniProt: Q6IPT2

  • Chr Location
    19q13.33; chr19:50466785-50476848 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    42
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000051113 Ensembl Gene Model | MGI Sequence Detail 4906 C57BL/6J ±  kb
transcript ENSMUST00000205359 Ensembl | MGI Sequence Detail 1307 Not Applicable  
polypeptide ENSMUSP00000145700 Ensembl | MGI Sequence Detail 272 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR022168 Golgi associated RAB2 interactor protein-like, Rab2B-binding domain
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 3
Other
Accession IDs
less
MGI:1919501, MGI:1925546
References
more
  • Summaries
    All 27
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:319688 Takahama M, et al., The RAB2B-GARIL5 Complex Promotes Cytosolic DNA-Induced Innate Immune Responses. Cell Rep. 2017 Sep 19;20(12):2944-2954
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/19/2023
MGI 6.22 		The Jackson Laboratory