1700012J22Rik Gene Detail

Summary

• Symbol
  1700012J22Rik
• Name
  RIKEN cDNA 1700012J22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922746
  NCBI Gene: 75496
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:99778482-99779311 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922746	lncRNA gene	Chr13:99778482-99779311 (+)
129S1/SvImJ	ENSMUSG00200009363	unclassified gene	Chr13:94357298-94358127 (+)
A/J	ENSMUSG00195031023	unclassified gene	Chr13:94824368-94825197 (+)
AKR/J	ENSMUSG00220028156	unclassified gene	Chr13:93311964-93312793 (+)
BALB/cJ	ENSMUSG00180037178	unclassified gene	Chr13:95358850-95359679 (+)
C3H/HeJ	ENSMUSG00175017335	unclassified gene	Chr13:95525705-95526534 (+)
C57BL/6NJ	ENSMUSG00215030619	unclassified gene	Chr13:95430019-95430848 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000669	unclassified gene	Chr13:93277626-93278455 (+)
CAST/EiJ	ENSTCUG00005011641	unclassified gene	Chr13:94632729-94633558 (+)
CBA/J	ENSMUSG00210012116	unclassified gene	Chr13:94858751-94859580 (+)
DBA/2J	ENSMUSG00185019909	unclassified gene	Chr13:98519587-98520416 (+)
FVB/NJ	ENSMUSG00205036120	unclassified gene	Chr13:94306465-94307294 (+)
JF1/MsJ	ENSUMUG00000032755	unclassified gene	Chr13:98197932-98198761 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190044460	unclassified gene	Chr13:95188921-95189750 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010026869	unclassified gene	Chr13:94294039-94294868 (+)
SPRET/EiJ	ENSMSPG00010009736	unclassified gene	Chr13:95636261-95637083 (+)
WSB/EiJ	ENSIUOG00005037066	unclassified gene	Chr13:94196599-94197428 (+)

Homology

• Gene Tree
  1700012J22Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000103545 (Evidence)
• NCBI Gene
  75496

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103545	Ensembl Gene Model | MGI Sequence Detail	830	C57BL/6J
transcript	AK005917	GenBank | ENA | DDBJ | MGI Sequence Detail	833	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700012J22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120836	Chr13:99778459-99778465 (+)	-20 bp
Tssr120837	Chr13:99778491-99778500 (+)	14 bp