Zbed5-ps Pseudogene Detail

Summary

• Symbol
  Zbed5-ps
• Name
  zinc finger, BED type containing 5, pseudogene
• Synonyms
  1700012D14Rik

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1922729
  NCBI Gene: 75479
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:110716880-110721882 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 58.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922729	pseudogene	Chr7:110682271-110721963 (-)
129S1/SvImJ	ENSMUSG00200035045	lncRNA gene	Chr7:97225371-97265103 (-)
A/J	ENSMUSG00195041245	lncRNA gene	Chr7:101728815-101768530 (-)
AKR/J	ENSMUSG00220039655	lncRNA gene	Chr7:95131757-95171485 (-)
BALB/cJ	ENSMUSG00180046523	lncRNA gene	Chr7:98396938-98436661 (-)
C3H/HeJ	ENSMUSG00175052013	lncRNA gene	Chr7:99032808-99072524 (-)
C57BL/6NJ	ENSMUSG00215051743	lncRNA gene	Chr7:98337613-98377339 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044766	lncRNA gene	Chr7:101711291-101750774 (-)
CBA/J	ENSMUSG00210047373	lncRNA gene	Chr7:98859854-98899567 (-)
DBA/2J	ENSMUSG00185022060	lncRNA gene	Chr7:103209985-103249705 (-)
FVB/NJ	ENSMUSG00205048609	lncRNA gene	Chr7:98822261-98861979 (-)
JF1/MsJ	ENSUMUG00000052411	lncRNA gene	Chr7:108223546-108263015 (-)
LP/J	ENSMUSG00230049068	lncRNA gene	Chr7:109311082-109350796 (-)
NOD/ShiLtJ	ENSMUSG00190047380	lncRNA gene	Chr7:99021389-99061110 (-)
NZO/HlLtJ	ENSMUSG00225018917	lncRNA gene	Chr7:107533926-107573573 (-)
PWK/PhJ	ENSLUMG00010043788	lncRNA gene	Chr7:97356597-97396100 (-)
SPRET/EiJ	ENSMSPG00010041991	lncRNA gene	Chr7:98523962-98563449 (-)
WSB/EiJ	ENSIUOG00005050348	lncRNA gene	Chr7:99668231-99707981 (-)

Homology

• Gene Tree
  Zbed5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  2 involving Zbed5-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000110424 (Evidence)
• NCBI Gene
  75479

Representative Sequences			Length	Strain/Species
genomic	75479	NCBI Gene Model | MGI Sequence Detail	5003	C57BL/6J
transcript	NR_015573	RefSeq | MGI Sequence Detail	629	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:6865768

References

• Summaries
  All 22

  Phenotypes 12
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Zbed5-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74304	Chr7:110721875-110721916 (-)	-14 bp