4930597A21Rik Gene Detail

Summary

• Symbol
  4930597A21Rik
• Name
  RIKEN cDNA 4930597A21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922639
  NCBI Gene: 75389
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:44477144-44482056 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 26.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  323 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922639	lncRNA gene	Chr11:44465965-44482057 (+)
129S1/SvImJ	ENSMUSG00200040703	lncRNA gene	Chr11:41561103-41565904 (+)
A/J	ENSMUSG00195037443	lncRNA gene	Chr11:41513030-41517831 (+)
AKR/J	ENSMUSG00220041480	lncRNA gene	Chr11:41699697-41704496 (+)
BALB/cJ	ENSMUSG00180037569	lncRNA gene	Chr11:41502884-41507685 (+)
C3H/HeJ	ENSMUSG00175040704	lncRNA gene	Chr11:41506627-41511428 (+)
C57BL/6NJ	ENSMUSG00215039084	lncRNA gene	Chr11:41418600-41423513 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004728	lincRNA gene	Chr11:39794408-39799371 (+)
CAST/EiJ	ENSTCUG00005013139	lncRNA gene	Chr11:41239608-41244470 (+)
CBA/J	ENSMUSG00210030774	lncRNA gene	Chr11:41396497-41401298 (+)
DBA/2J	ENSMUSG00185028397	lncRNA gene	Chr11:41570931-41575731 (+)
FVB/NJ	ENSMUSG00205041231	lncRNA gene	Chr11:41495202-41499999 (+)
JF1/MsJ	ENSUMUG00000043229	lncRNA gene	Chr11:41801008-41805906 (+)
LP/J	ENSMUSG00230034344	lncRNA gene	Chr11:42722998-42727799 (+)
NOD/ShiLtJ	ENSMUSG00190044516	lncRNA gene	Chr11:41613158-41617957 (+)
NZO/HlLtJ	ENSMUSG00225036274	lncRNA gene	Chr11:44669469-44674266 (+)
PWK/PhJ	ENSLUMG00010007315	lncRNA gene	Chr11:41384076-41389041 (+)
SPRET/EiJ	ENSMSPG00010020056	lncRNA gene	Chr11:42011797-42016804 (+)
WSB/EiJ	ENSIUOG00005041242	lncRNA gene	Chr11:41367336-41372137 (+)

Homology

• Gene Tree
  4930597A21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930597A21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000086501 (Evidence)
• NCBI Gene
  75389

Representative Sequences			Length	Strain/Species
genomic	75389	NCBI Gene Model | MGI Sequence Detail	4913	C57BL/6J
transcript	NR_126460	RefSeq | MGI Sequence Detail	698	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573