4930555K19Rik Pseudogene Detail

Summary

• Symbol
  4930555K19Rik
• Name
  RIKEN cDNA 4930555K19 gene

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1922612
  NCBI Gene: 100418302
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:41037097-41038821 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 15.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922612	pseudogene	Chr15:41036883-41058133 (+)
129S1/SvImJ	ENSMUSG00200028259	pseudogene	Chr15:37981784-37982167 (+)
A/J	ENSMUSG00195037656	pseudogene	Chr15:37976215-37976597 (+)
AKR/J	ENSMUSG00220031557	pseudogene	Chr15:37856540-37856921 (+)
BALB/cJ	ENSMUSG00180034163	pseudogene	Chr15:37954411-37954793 (+)
C3H/HeJ	ENSMUSG00175029701	pseudogene	Chr15:38111922-38112302 (+)
C57BL/6NJ	ENSMUSG00215027477	pseudogene	Chr15:37948933-37949314 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010383	pseudogene	Chr2:28810778-28812031 (-)
CAST/EiJ	ENSTCUG00005011043	pseudogene	Chr15:37957404-37957787 (+)
CBA/J	ENSMUSG00210018418	pseudogene	Chr15:38069805-38070186 (+)
DBA/2J	ENSMUSG00185035900	pseudogene	Chr15:38050645-38051026 (+)
FVB/NJ	ENSMUSG00205032729	pseudogene	Chr15:37899317-37899699 (+)
JF1/MsJ	ENSUMUG00000038501	pseudogene	Chr15:37880768-37881151 (+)
LP/J	ENSMUSG00230013260	pseudogene	Chr15:41364314-41364697 (+)
NOD/ShiLtJ	ENSMUSG00190034724	pseudogene	Chr15:37977257-37977638 (+)
NZO/HlLtJ	ENSMUSG00225037919	pseudogene	Chr15:41728866-41729247 (+)
PWK/PhJ	ENSLUMG00010033399	pseudogene	Chr15:38051554-38051937 (+)
SPRET/EiJ	ENSMSPG00010014112	pseudogene	Chr15:38841036-38841415 (+)
WSB/EiJ	ENSIUOG00005034731	pseudogene	Chr15:38019305-38019688 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930555K19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  60
• Tissues
  56
• cDNA Data
  2
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000048559 (Evidence), ENSMUSG00000130787 (Evidence)
• NCBI Gene
  100418302

Representative Sequences			Length	Strain/Species
genomic	100418302	NCBI Gene Model | MGI Sequence Detail	1725	C57BL/6J
transcript	NR_151516	RefSeq | MGI Sequence Detail	1725	C57BL/6
polypeptide	Q8CER6	UniProt | EBI | MGI Sequence Detail	56	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 3

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130

TSS for 4930555K19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131185	Chr15:41037055-41037083 (+)	-28 bp