4930553I21Rik Gene Detail

Summary

• Symbol
  4930553I21Rik
• Name
  RIKEN cDNA 4930553I21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922603
  NCBI Gene: 75353
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:8736608-8737187 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922603	lncRNA gene	Chr10:8736608-8737187 (-)
129S1/SvImJ	ENSMUSG00200010875	unclassified gene	Chr10:5727801-5728380 (-)
A/J	ENSMUSG00195010195	unclassified gene	Chr10:5616701-5617280 (-)
AKR/J	ENSMUSG00220007586	unclassified gene	Chr10:5739882-5740461 (-)
BALB/cJ	ENSMUSG00180025144	unclassified gene	Chr10:5778744-5779323 (-)
C3H/HeJ	ENSMUSG00175012831	unclassified gene	Chr10:5776782-5777361 (-)
C57BL/6NJ	ENSMUSG00215005371	unclassified gene	Chr10:5677960-5678539 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018061	unclassified gene	Chr10:5732570-5733139 (-)
CBA/J	ENSMUSG00210012706	unclassified gene	Chr10:5722426-5723005 (-)
DBA/2J	ENSMUSG00185010374	unclassified gene	Chr10:5768938-5769517 (-)
FVB/NJ	ENSMUSG00205008553	unclassified gene	Chr10:5739942-5740516 (-)
JF1/MsJ	ENSUMUG00000037961	unclassified gene	Chr10:5834955-5835534 (-)
LP/J	ENSMUSG00230017880	unclassified gene	Chr10:7378647-7379226 (-)
NOD/ShiLtJ	ENSMUSG00190026295	unclassified gene	Chr10:5732687-5733266 (-)
NZO/HlLtJ	ENSMUSG00225017210	unclassified gene	Chr10:11916062-11916641 (-)
PWK/PhJ	ENSLUMG00010021338	unclassified gene	Chr10:5562575-5563154 (-)
SPRET/EiJ	ENSMSPG00010006821	unclassified gene	Chr10:5914369-5914956 (-)
WSB/EiJ	ENSIUOG00005013875	unclassified gene	Chr10:5659903-5660482 (-)

Homology

• Gene Tree
  4930553I21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111165 (Evidence)
• NCBI Gene
  75353

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111165	Ensembl Gene Model | MGI Sequence Detail	580	C57BL/6J
transcript	AK016106	GenBank | ENA | DDBJ | MGI Sequence Detail	582	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930553I21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96653	Chr10:8737186-8737190 (-)	-1 bp