4930557B06Rik Gene Detail

Summary

• Symbol
  4930557B06Rik
• Name
  RIKEN cDNA 4930557B06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922593
  NCBI Gene: 75343
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:113290315-113290695 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, cytoband F
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922593	lncRNA gene	Chr5:113290315-113290695 (+)
129S1/SvImJ	ENSMUSG00200023260	unclassified gene	Chr5:107034664-107035044 (+)
A/J	ENSMUSG00195043003	unclassified gene	Chr5:106543704-106544084 (+)
AKR/J	ENSMUSG00220052334	unclassified gene	Chr5:106059178-106059558 (+)
BALB/cJ	ENSMUSG00180049178	unclassified gene	Chr5:106685065-106685445 (+)
C3H/HeJ	ENSMUSG00175047095	unclassified gene	Chr5:108666324-108666704 (+)
C57BL/6NJ	ENSMUSG00215036089	unclassified gene	Chr5:106690226-106690606 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001469	unclassified gene	Chr5:106077715-106078095 (+)
CAST/EiJ	ENSTCUG00005033739	unclassified gene	Chr5:105868997-105869379 (+)
CBA/J	ENSMUSG00210045111	unclassified gene	Chr5:107418401-107418781 (+)
DBA/2J	ENSMUSG00185048392	unclassified gene	Chr5:110468807-110469187 (+)
FVB/NJ	ENSMUSG00205051874	unclassified gene	Chr5:106322807-106323187 (+)
JF1/MsJ	ENSUMUG00000055465	unclassified gene	Chr5:113306147-113306527 (+)
LP/J	ENSMUSG00230049618	unclassified gene	Chr5:114572923-114573303 (+)
NOD/ShiLtJ	ENSMUSG00190051234	unclassified gene	Chr5:106358386-106358766 (+)
NZO/HlLtJ	ENSMUSG00225016077	unclassified gene	Chr5:122215353-122215733 (+)
PWK/PhJ	ENSLUMG00010041285	unclassified gene	Chr5:105217709-105218089 (+)
SPRET/EiJ	ENSMSPG00010046623	unclassified gene	Chr5:108479209-108479589 (+)
WSB/EiJ	ENSIUOG00005045936	unclassified gene	Chr5:109059862-109060242 (+)

Homology

• Gene Tree
  4930557B06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106191 (Evidence)
• NCBI Gene
  75343

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106191	Ensembl Gene Model | MGI Sequence Detail	381	C57BL/6J
transcript	AK016157	GenBank | ENA | DDBJ | MGI Sequence Detail	383	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573