4930564C03Rik Gene Detail

Summary

• Symbol
  4930564C03Rik
• Name
  RIKEN cDNA 4930564C03 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1922591
  NCBI Gene: 75341
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:45190657-45191182 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 21.69 cM, cytoband C
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922591	protein coding gene	Chr17:45190591-45191772 (-)
129S1/SvImJ	ENSMUSG00200052279	pseudogene	Chr17:40397136-40397661 (-)
129S1/SvImJ	ENSMUSG00200046544	protein coding gene	Chr17:40396995-40398264 (-)
A/J	ENSMUSG00195020879	protein coding gene	Chr17:41897184-41898453 (-)
A/J	ENSMUSG00195023034	pseudogene	Chr17:41897325-41897850 (-)
AKR/J	ENSMUSG00220051394	protein coding gene	Chr17:40865324-40866593 (-)
AKR/J	ENSMUSG00220052971	pseudogene	Chr17:40865465-40865990 (-)
BALB/cJ	ENSMUSG00180020496	protein coding gene	Chr17:41632816-41634085 (-)
BALB/cJ	ENSMUSG00180025726	pseudogene	Chr17:41632957-41633482 (-)
C3H/HeJ	ENSMUSG00175013647	protein coding gene	Chr17:40946913-40948182 (-)
C3H/HeJ	ENSMUSG00175017000	pseudogene	Chr17:40947054-40947579 (-)
C57BL/6NJ	ENSMUSG00215053868	pseudogene	Chr17:40511157-40511682 (-)
C57BL/6NJ	ENSMUSG00215052904	protein coding gene	Chr17:40511016-40512285 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026473	pseudogene	Chr17:41694517-41695042 (-)
CBA/J	ENSMUSG00210052485	pseudogene	Chr17:40696809-40697334 (-)
CBA/J	ENSMUSG00210047042	protein coding gene	Chr17:40696668-40697937 (-)
DBA/2J	ENSMUSG00185030934	pseudogene	Chr17:43613685-43614210 (-)
DBA/2J	ENSMUSG00185027586	protein coding gene	Chr17:43613544-43614813 (-)
FVB/NJ	ENSMUSG00205053342	pseudogene	Chr17:41180001-41180526 (-)
JF1/MsJ	ENSUMUG00000036722	pseudogene	Chr17:43240245-43240767 (-)
LP/J	ENSMUSG00230039923	protein coding gene	Chr17:44507645-44508914 (-)
LP/J	ENSMUSG00230041836	pseudogene	Chr17:44507786-44508311 (-)
NOD/ShiLtJ	ENSMUSG00190029242	protein coding gene	Chr17:40590839-40592108 (-)
NOD/ShiLtJ	ENSMUSG00190053857	pseudogene	Chr17:40590980-40591505 (-)
NZO/HlLtJ	ENSMUSG00225043303	protein coding gene	Chr17:46759473-46760742 (-)
NZO/HlLtJ	ENSMUSG00225043997	pseudogene	Chr17:46759614-46760139 (-)
PWK/PhJ	ENSLUMG00010046886	pseudogene	Chr17:40474528-40475050 (-)
SPRET/EiJ	ENSMSPG00010051366	pseudogene	Chr17:40675414-40675939 (-)
WSB/EiJ	ENSIUOG00005028695	pseudogene	Chr17:41561526-41562051 (-)

Homology

• Gene Tree
  4930564C03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000117326 (Evidence)
• NCBI Gene
  75341

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117326	Ensembl Gene Model | MGI Sequence Detail	526	C57BL/6J
transcript	ENSMUST00000233907	Ensembl | MGI Sequence Detail	526	Not Applicable
polypeptide	NP_083533	RefSeq | MGI Sequence Detail	174	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR040005 RNA polymerase I subunit H

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930564C03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148188	Chr17:45191763-45191777 (-)	-588 bp
Tssr148187	Chr17:45191758-45191761 (-)	-578 bp
Tssr148186	Chr17:45191728-45191745 (-)	-555 bp
Tssr148185	Chr17:45191720-45191725 (-)	-541 bp
Tssr148184	Chr17:45191717-45191718 (-)	-536 bp