4930555A03Rik Gene Detail

Summary

• Symbol
  4930555A03Rik
• Name
  RIKEN cDNA 4930555A03 gene
• Synonyms
  2210404B08Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922587
  NCBI Gene: 100504653
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:150999799-151002487 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 76.76 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922587	lncRNA gene	Chr3:150999739-151002983 (+)
129S1/SvImJ	ENSMUSG00200003654	lncRNA gene	Chr3:147933139-147936381 (+)
A/J	ENSMUSG00195003423	lncRNA gene	Chr3:148070853-148074095 (+)
AKR/J	ENSMUSG00220000463	lncRNA gene	Chr3:146485095-146488337 (+)
BALB/cJ	ENSMUSG00180028507	lncRNA gene	Chr3:147928617-147931859 (+)
C3H/HeJ	ENSMUSG00175020101	lncRNA gene	Chr3:147520786-147524028 (+)
C57BL/6NJ	ENSMUSG00215022712	lncRNA gene	Chr3:148192251-148195493 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005793	lincRNA gene	Chr3:144348035-144350569 (+)
CAST/EiJ	ENSTCUG00005001412	lncRNA gene	Chr3:148614768-148618016 (+)
CBA/J	ENSMUSG00210004818	lncRNA gene	Chr3:148163656-148166898 (+)
DBA/2J	ENSMUSG00185025555	lncRNA gene	Chr3:148815324-148818566 (+)
FVB/NJ	ENSMUSG00205009397	lncRNA gene	Chr3:147095288-147098530 (+)
JF1/MsJ	ENSUMUG00000035448	lncRNA gene	Chr3:147587411-147590658 (+)
LP/J	ENSMUSG00230019205	lncRNA gene	Chr3:150685785-150689027 (+)
NOD/ShiLtJ	ENSMUSG00190004966	lncRNA gene	Chr3:149166283-149169525 (+)
NZO/HlLtJ	ENSMUSG00225005945	lncRNA gene	Chr3:153210589-153213831 (+)
PWK/PhJ	ENSLUMG00010001843	lncRNA gene	Chr3:147497159-147500401 (+)
SPRET/EiJ	ENSMSPG00010008477	lncRNA gene	Chr3:148826772-148830026 (+)
WSB/EiJ	ENSIUOG00005015710	lncRNA gene	Chr3:148310414-148313669 (+)

Homology

• Gene Tree
  4930555A03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  4

• Ensembl
  ENSMUSG00000106157 (Evidence)
• NCBI Gene
  100504653

Representative Sequences			Length	Strain/Species
genomic	100504653	NCBI Gene Model | MGI Sequence Detail	2689	C57BL/6J
transcript	NR_166403	RefSeq | MGI Sequence Detail	2106	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:1922916

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930555A03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32380	Chr3:150999778-150999815 (+)	-2 bp
Tssr32381	Chr3:150999840-150999855 (+)	49 bp
Tssr32382	Chr3:150999866-150999880 (+)	74 bp
Tssr1093	Chr3:151000156-151000166 (+)	362 bp
Tssr1094	Chr3:151000168-151000183 (+)	377 bp