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Taf1d Gene Detail
Summary
  • Symbol
    Taf1d
  • Name
    TATA-box binding protein associated factor, RNA polymerase I, D
  • Synonyms
    2810003M17Rik, 4930553M18Rik, 5930426I11Rik, Josd3, TAFI41, TAF(I)41
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922566
    NCBI Gene: 75316
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:15217510-15228287 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 4.78 cM, cytoband A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922566
 protein coding gene Chr9:15217485-15228293 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034364
 protein coding gene Chr9:12289510-12295400 (+)
A/J MGP_AJ_G0034342
 protein coding gene Chr9:12222035-12227925 (+)
AKR/J MGP_AKRJ_G0034270
 protein coding gene Chr9:12247508-12253398 (+)
BALB/cJ MGP_BALBcJ_G0034336
 protein coding gene Chr9:11993553-11999443 (+)
C3H/HeJ MGP_C3HHeJ_G0034047
 protein coding gene Chr9:12558216-12564106 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034858
 protein coding gene Chr9:12688407-12695355 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031796
 protein coding gene Chr9:11492357-11498615 (+)
CAST/EiJ MGP_CASTEiJ_G0033374
 protein coding gene Chr9:12402436-12409019 (+)
CBA/J MGP_CBAJ_G0034020
 protein coding gene Chr9:13280181-13286081 (+)
DBA/2J MGP_DBA2J_G0034177
 protein coding gene Chr9:12081736-12087626 (+)
FVB/NJ MGP_FVBNJ_G0034122
 protein coding gene Chr9:11675595-11681470 (+)
LP/J MGP_LPJ_G0034263
 protein coding gene Chr9:12390867-12396773 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034166
 protein coding gene Chr9:14289999-14295888 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034877
 protein coding gene Chr9:12276478-12282352 (+)
PWK/PhJ MGP_PWKPhJ_G0033080
 protein coding gene Chr9:12161505-12167503 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0033490
 protein coding gene Chr9:12114540-12121160 (+)



Homology
more
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
  • Synonyms
    JOSD3, RAFI41, TAFI41, TAF(I)41
  • Links
    NCBI Gene ID: 79101
    neXtProt AC: NX_Q9H5J8
    UniProt: Q9H5J8

  • Chr Location
    11q21; chr11:93729948-93784391 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    811
  • Tissues
    102
  • cDNA Data
    24
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031939 Ensembl Gene Model | MGI Sequence Detail 10778 C57BL/6J ±  kb
    transcript ENSMUST00000034415 Ensembl | MGI Sequence Detail 1148 Not Applicable  
    polypeptide ENSMUSP00000034415 Ensembl | MGI Sequence Detail 322 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • Protein Ontology
      PR:000016023 TATA box-binding protein-associated factor RNA polymerase I subunit D
      (term hierarchy)
    • InterPro Domains
      IPR027976 TATA box-binding protein-associated factor 1D
    Molecular
    Reagents
    less
    • All nucleic 30
      cDNA 26
      Primer pair 3
      Other 1

      Microarray probesets 12
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 8
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:342644 Tscherner AK, et al., Relationship of quantitative reverse transcription polymerase chain reaction (RT-PCR) to RNA Sequencing (RNAseq) transcriptome identifies mouse preimplantation embryo reference genes. Biol Reprod. 2023 Nov 15;109(5):601-617
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory