About   Help   FAQ
Taf1d Gene Detail
Summary
  • Symbol
    Taf1d
  • Name
    TATA-box binding protein associated factor, RNA polymerase I, D
  • Synonyms
    2810003M17Rik, 4930553M18Rik, 5930426I11Rik, Josd3, TAF(I)41, TAFI41
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922566
    NCBI Gene: 75316
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:15217510-15228287 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 4.78 cM, cytoband A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    310 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922566
 protein coding gene Chr9:15217485-15228293 (+)
129S1/SvImJ ENSMUSG00200045269
 protein coding gene Chr9:12120028-12125991 (+)
A/J ENSMUSG00195036460
 protein coding gene Chr9:12005647-12011610 (+)
AKR/J ENSMUSG00220030281
 protein coding gene Chr9:11983081-11989044 (+)
BALB/cJ ENSMUSG00180041276
 protein coding gene Chr9:12129654-12135617 (+)
C3H/HeJ ENSMUSG00175041227
 protein coding gene Chr9:12076520-12082483 (+)
C57BL/6NJ ENSMUSG00215035103
 protein coding gene Chr9:12071132-12077095 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031796
 protein coding gene Chr9:11492357-11498615 (+)
CAST/EiJ ENSTCUG00005027734
 protein coding gene Chr9:12112880-12118846 (+)
CBA/J ENSMUSG00210034978
 protein coding gene Chr9:12107703-12113666 (+)
DBA/2J ENSMUSG00185025910
 protein coding gene Chr9:12196222-12202185 (+)
FVB/NJ ENSMUSG00205022365
 protein coding gene Chr9:12180252-12186216 (+)
JF1/MsJ ENSUMUG00000044087
 protein coding gene Chr9:12199180-12205121 (+)
LP/J ENSMUSG00230043603
 protein coding gene Chr9:12618089-12624052 (+)
NOD/ShiLtJ ENSMUSG00190023777
 protein coding gene Chr9:12106691-12112654 (+)
NZO/HlLtJ ENSMUSG00225048088
 protein coding gene Chr9:12515658-12521621 (+)
PWK/PhJ ENSLUMG00010046342
 protein coding gene Chr9:12132459-12138417 (+)
SPRET/EiJ ENSMSPG00010022446
 protein coding gene Chr9:12317426-12323892 (+)
WSB/EiJ ENSIUOG00005044487
 protein coding gene Chr9:11783431-11789385 (+)



Homology
more
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TAF1D, TATA-box binding protein associated factor, RNA polymerase I subunit D
  • Synonyms
    JOSD3, RAFI41, TAF(I)41, TAFI41
  • Links
    NCBI Gene ID: 79101
    UniProt: Q9H5J8

  • Chr Location
    11q21; chr11:93729948-93784391 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 2 genetic backgrounds
    1 images
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show embryonic lethality before implantation. In vitro, embryos fail to hatch from the zona pellucida and die after 3 days in culture, never forming outgrowths.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    702
  • Tissues
    102
  • cDNA Data
    24
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031939 Ensembl Gene Model | MGI Sequence Detail 10778 C57BL/6J ±  kb
transcript ENSMUST00000034415 Ensembl | MGI Sequence Detail 1148 Not Applicable  
polypeptide ENSMUSP00000034415 Ensembl | MGI Sequence Detail 322 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000016023 TATA box-binding protein-associated factor RNA polymerase I subunit D
    (term hierarchy)
  • InterPro Domains
    IPR027976 TATA box-binding protein-associated factor 1D
Molecular
Reagents
less
  • All nucleic 30
    cDNA 26
    Primer pair 3
    Other 1

    Microarray probesets 12
References
more
  • Summaries
    All 43
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory