4930556N09Rik Gene Detail

Summary

• Symbol
  4930556N09Rik
• Name
  RIKEN cDNA 4930556N09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922551
  NCBI Gene: 75301
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:96871630-96896921 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  842 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922551	lncRNA gene	Chr10:96871602-96896937 (+)
129S1/SvImJ	ENSMUSG00200020490	lncRNA gene	Chr10:93383130-93408431 (+)
A/J	ENSMUSG00195015797	lncRNA gene	Chr10:93814711-93840006 (+)
AKR/J	ENSMUSG00220025729	lncRNA gene	Chr10:93379227-93404531 (+)
BALB/cJ	ENSMUSG00180010149	lncRNA gene	Chr10:93822603-93847894 (+)
C3H/HeJ	ENSMUSG00175006057	lncRNA gene	Chr10:93716360-93742646 (+)
C57BL/6NJ	ENSMUSG00215006631	lncRNA gene	Chr10:93404191-93429483 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005935	lncRNA gene	Chr10:93094891-93120049 (+)
CBA/J	ENSMUSG00210022814	lncRNA gene	Chr10:93547539-93572836 (+)
DBA/2J	ENSMUSG00185019574	lncRNA gene	Chr10:93764766-93790071 (+)
FVB/NJ	ENSMUSG00205003839	lncRNA gene	Chr10:93472148-93497466 (+)
JF1/MsJ	ENSUMUG00000032238	lncRNA gene	Chr10:95212029-95237180 (+)
LP/J	ENSMUSG00230022046	lncRNA gene	Chr10:95675476-95700764 (+)
NOD/ShiLtJ	ENSMUSG00190024973	lncRNA gene	Chr10:93797198-93822495 (+)
NZO/HlLtJ	ENSMUSG00225021893	lncRNA gene	Chr10:99915177-99940474 (+)
PWK/PhJ	ENSLUMG00010005856	lncRNA gene	Chr10:93475582-93500916 (+)
SPRET/EiJ	ENSMSPG00010010969	lncRNA gene	Chr10:95115130-95145729 (+)
WSB/EiJ	ENSIUOG00005013415	lncRNA gene	Chr10:93511851-93536990 (+)

Homology

• Gene Tree
  4930556N09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930556N09Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000111924 (Evidence)
• NCBI Gene
  75301

Representative Sequences			Length	Strain/Species
genomic	75301	NCBI Gene Model | MGI Sequence Detail	25292	C57BL/6J
transcript	NR_045358	RefSeq | MGI Sequence Detail	1015	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573