4930547M16Rik Gene Detail

Summary

• Symbol
  4930547M16Rik
• Name
  RIKEN cDNA 4930547M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922549
  NCBI Gene: 75299
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:39775052-39799885 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  859 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922549	lncRNA gene	Chr10:39775052-39799885 (+)
129S1/SvImJ	ENSMUSG00200010107	lncRNA gene	Chr10:36630509-36639132 (+)
A/J	ENSMUSG00195017708	lncRNA gene	Chr10:36933220-36941842 (+)
AKR/J	ENSMUSG00220029643	lncRNA gene	Chr10:36609848-36618470 (+)
BALB/cJ	ENSMUSG00180016911	lncRNA gene	Chr10:37018484-37027107 (+)
C3H/HeJ	ENSMUSG00175012795	lncRNA gene	Chr10:36812812-36821434 (+)
C57BL/6NJ	ENSMUSG00215011553	lncRNA gene	Chr10:36563351-36571974 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004634	lincRNA gene	Chr10:35395085-35402556 (+)
CAST/EiJ	ENSTCUG00005029182	lncRNA gene	Chr10:37016198-37024559 (+)
CBA/J	ENSMUSG00210025995	lncRNA gene	Chr10:36706273-36714896 (+)
DBA/2J	ENSMUSG00185008169	lncRNA gene	Chr10:36858840-36867462 (+)
FVB/NJ	ENSMUSG00205014212	lncRNA gene	Chr10:36773445-36782068 (+)
JF1/MsJ	ENSUMUG00000036491	lncRNA gene	Chr10:36623850-36632284 (+)
LP/J	ENSMUSG00230016130	lncRNA gene	Chr10:38619553-38628175 (+)
NOD/ShiLtJ	ENSMUSG00190034253	lncRNA gene	Chr10:36987176-36995799 (+)
NZO/HlLtJ	ENSMUSG00225017821	lncRNA gene	Chr10:42946398-42955020 (+)
PWK/PhJ	ENSLUMG00010008277	lncRNA gene	Chr10:36751161-36759591 (+)
SPRET/EiJ	ENSMSPG00010021039	lncRNA gene	Chr10:37773657-37781600 (+)
WSB/EiJ	ENSIUOG00005015196	lncRNA gene	Chr10:36526426-36534848 (+)

Homology

• Gene Tree
  4930547M16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930547M16Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• UniProt
  1

• Ensembl
  ENSMUSG00000097890 (Evidence)
• NCBI Gene
  75299

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097890	Ensembl Gene Model | MGI Sequence Detail	24834	C57BL/6J
transcript	ENSMUST00000181590	Ensembl | MGI Sequence Detail	2428	Not Applicable
polypeptide	Q3TLM8	UniProt | EBI | MGI Sequence Detail	52	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930547M16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93010	Chr10:39775300-39775348 (+)	272 bp