4930548G14Rik Gene Detail

Summary

• Symbol
  4930548G14Rik
• Name
  RIKEN cDNA 4930548G14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922531
  NCBI Gene: 75281
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:46486701-46503254 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 17.77 cM, cytoband D1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  707 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922531	lncRNA gene	Chr15:46486691-46503254 (+)
129S1/SvImJ	ENSMUSG00200019588	lncRNA gene	Chr15:43421408-43438977 (+)
A/J	ENSMUSG00195005845	lncRNA gene	Chr15:43420729-43438301 (+)
AKR/J	ENSMUSG00220018285	lncRNA gene	Chr15:43390651-43407197 (+)
AKR/J	ENSMUSG00220017896	protein coding gene	Chr15:43390664-43406825 (+)
BALB/cJ	ENSMUSG00180004942	lncRNA gene	Chr15:43408292-43425860 (+)
C3H/HeJ	ENSMUSG00175020136	protein coding gene	Chr15:43642603-43658768 (+)
C3H/HeJ	ENSMUSG00175020891	lncRNA gene	Chr15:43642590-43659140 (+)
C57BL/6NJ	ENSMUSG00215003189	protein coding gene	Chr15:43427997-43444160 (+)
C57BL/6NJ	ENSMUSG00215003283	lncRNA gene	Chr15:43427984-43444532 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005090	lincRNA gene	Chr15:40933039-40952327 (+)
CAST/EiJ	ENSTCUG00005013949	lncRNA gene	Chr15:43376721-43393794 (+)
CBA/J	ENSMUSG00210026720	lncRNA gene	Chr15:43523782-43540329 (+)
CBA/J	ENSMUSG00210026157	protein coding gene	Chr15:43523795-43539957 (+)
DBA/2J	ENSMUSG00185012942	protein coding gene	Chr15:43489364-43505526 (+)
DBA/2J	ENSMUSG00185013135	lncRNA gene	Chr15:43489351-43505898 (+)
FVB/NJ	ENSMUSG00205011827	protein coding gene	Chr15:43448095-43464259 (+)
FVB/NJ	ENSMUSG00205015675	lncRNA gene	Chr15:43448082-43464631 (+)
JF1/MsJ	ENSUMUG00000025250	lncRNA gene	Chr15:43310117-43328234 (+)
LP/J	ENSMUSG00230014757	lncRNA gene	Chr15:46798578-46816145 (+)
NOD/ShiLtJ	ENSMUSG00190008466	protein coding gene	Chr15:43478807-43494970 (+)
NOD/ShiLtJ	ENSMUSG00190008655	lncRNA gene	Chr15:43478794-43495342 (+)
NZO/HlLtJ	ENSMUSG00225037877	protein coding gene	Chr15:47154978-47171144 (+)
NZO/HlLtJ	ENSMUSG00225037998	lncRNA gene	Chr15:47154965-47171516 (+)
PWK/PhJ	ENSLUMG00010012565	lncRNA gene	Chr15:43511894-43530015 (+)
SPRET/EiJ	ENSMSPG00010007073	lncRNA gene	Chr15:44411058-44429020 (+)
WSB/EiJ	ENSIUOG00005021943	lncRNA gene	Chr15:43528369-43545950 (+)

Homology

• Gene Tree
  4930548G14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 4930548G14Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000051198 (Evidence)
• NCBI Gene
  75281

Representative Sequences			Length	Strain/Species
genomic	75281	NCBI Gene Model | MGI Sequence Detail	16554	C57BL/6J
transcript	NR_045811	RefSeq | MGI Sequence Detail	1185	C57BL/6
polypeptide	Q9D4W7	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930548G14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131239	Chr15:46486754-46486763 (+)	58 bp