4930556M19Rik Gene Detail

Summary

• Symbol
  4930556M19Rik
• Name
  RIKEN cDNA 4930556M19 gene
• Synonyms
  1700009D01Rik, C130022M03Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922509
  NCBI Gene: 75259
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:10714922-10790209 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 5.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1979 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922509	lncRNA gene	Chr15:10713703-10790209 (+)
129S1/SvImJ	ENSMUSG00200033418	lncRNA gene	Chr15:7689579-7757966 (+)
A/J	ENSMUSG00195010743	lncRNA gene	Chr15:7597100-7665271 (+)
AKR/J	ENSMUSG00220022800	lncRNA gene	Chr15:7526336-7609549 (+)
BALB/cJ	ENSMUSG00180035690	lncRNA gene	Chr15:7605174-7680492 (+)
C3H/HeJ	ENSMUSG00175032540	lncRNA gene	Chr15:7762403-7837709 (+)
C57BL/6NJ	ENSMUSG00215028653	lncRNA gene	Chr15:7642799-7723371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005073	lincRNA gene	Chr15:7132272-7138571 (+)
CAST/EiJ	ENSTCUG00005026063	lncRNA gene	Chr15:7737898-7805509 (+)
CBA/J	ENSMUSG00210025711	lncRNA gene	Chr15:7747418-7822723 (+)
DBA/2J	ENSMUSG00185033037	lncRNA gene	Chr15:7704483-7779793 (+)
FVB/NJ	ENSMUSG00205032949	lncRNA gene	Chr15:7589395-7652036 (+)
JF1/MsJ	ENSUMUG00000037613	lncRNA gene	Chr15:7806847-7879621 (+)
LP/J	ENSMUSG00230015846	lncRNA gene	Chr15:11182536-11250909 (+)
NOD/ShiLtJ	ENSMUSG00190010533	lncRNA gene	Chr15:7658004-7726355 (+)
NZO/HlLtJ	ENSMUSG00225024138	lncRNA gene	Chr15:11425753-11501045 (+)
PWK/PhJ	ENSLUMG00010036948	lncRNA gene	Chr15:7864989-7940065 (+)
SPRET/EiJ	ENSMSPG00010032679	lncRNA gene	Chr15:7873174-7942662 (+)
WSB/EiJ	ENSIUOG00005030242	lncRNA gene	Chr15:7661930-7730050 (+)

Homology

• Gene Tree
  4930556M19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  16

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  149
• RefSeq
  3

• Ensembl
  ENSMUSG00000096971 (Evidence)
• NCBI Gene
  75259

Representative Sequences			Length	Strain/Species
genomic	75259	NCBI Gene Model | MGI Sequence Detail	75288	C57BL/6J
transcript	NR_045063	RefSeq | MGI Sequence Detail	2468	C57BL/6

Molecular
Reagents

• All nucleic 16

  cDNA 16

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1916563, MGI:2444779

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4930556M19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130694	Chr15:10713763-10713772 (+)	-1,154 bp
Tssr130695	Chr15:10714925-10714967 (+)	24 bp
Tssr130696	Chr15:10717665-10717669 (+)	2,745 bp
Tssr130697	Chr15:10724000-10724042 (+)	9,099 bp