4930554C24Rik Gene Detail

Summary

• Symbol
  4930554C24Rik
• Name
  RIKEN cDNA 4930554C24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922503
  NCBI Gene: 75253
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:84656451-84666404 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  351 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922503	lncRNA gene	Chr9:84656413-84744967 (+)
129S1/SvImJ	ENSMUSG00200005701	lncRNA gene	Chr9:81741729-81825050 (+)
A/J	ENSMUSG00195007794	lncRNA gene	Chr9:81559533-81642891 (+)
AKR/J	ENSMUSG00220020365	lncRNA gene	Chr9:81692820-81773670 (+)
BALB/cJ	ENSMUSG00180007700	lncRNA gene	Chr9:81664301-81747621 (+)
C3H/HeJ	ENSMUSG00175004803	lncRNA gene	Chr9:81724411-81807741 (+)
C57BL/6NJ	ENSMUSG00215011301	lncRNA gene	Chr9:81662255-81745553 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006802	lincRNA gene	Chr9:81403065-81414308 (+)
CAST/EiJ	ENSTCUG00005004617	lncRNA gene	Chr9:81269025-81351282 (+)
CBA/J	ENSMUSG00210005979	lncRNA gene	Chr9:81793380-81874196 (+)
DBA/2J	ENSMUSG00185001906	lncRNA gene	Chr9:81802982-81883817 (+)
FVB/NJ	ENSMUSG00205005369	lncRNA gene	Chr9:81959792-82049527 (+)
JF1/MsJ	ENSUMUG00000034320	lncRNA gene	Chr9:81683788-81764746 (+)
LP/J	ENSMUSG00230009734	lncRNA gene	Chr9:81880438-81963749 (+)
NOD/ShiLtJ	ENSMUSG00190011867	lncRNA gene	Chr9:81854201-81937523 (+)
NZO/HlLtJ	ENSMUSG00225016727	lncRNA gene	Chr9:82084504-82174231 (+)
PWK/PhJ	ENSLUMG00010002938	lncRNA gene	Chr9:81615962-81698422 (+)
SPRET/EiJ	ENSMSPG00010002833	lncRNA gene	Chr9:82987475-83072947 (+)
WSB/EiJ	ENSIUOG00005003912	lncRNA gene	Chr9:81245499-81328738 (+)

Homology

• Gene Tree
  4930554C24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930554C24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000099724 (Evidence)
• NCBI Gene
  75253

Representative Sequences			Length	Strain/Species
genomic	75253	NCBI Gene Model | MGI Sequence Detail	9954	C57BL/6J
transcript	NR_040739	RefSeq | MGI Sequence Detail	1084	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573