Hmgb4os Gene Detail

Summary

• Symbol
  Hmgb4os
• Name
  high-mobility group box 4, opposite strand
• Synonyms
  4930546G22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922492
  NCBI Gene: 75242
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:128154837-128156783 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922492	antisense lncRNA gene	Chr4:128154746-128156802 (+)
129S1/SvImJ	ENSMUSG00200015079	lncRNA gene	Chr4:121594720-121596666 (+)
A/J	ENSMUSG00195045746	lncRNA gene	Chr4:122935296-122937246 (+)
AKR/J	ENSMUSG00220023091	lncRNA gene	Chr4:121920721-121922667 (+)
BALB/cJ	ENSMUSG00180047871	lncRNA gene	Chr4:120568988-120570938 (+)
C3H/HeJ	ENSMUSG00175027051	lncRNA gene	Chr4:121581660-121583610 (+)
C57BL/6NJ	ENSMUSG00215052618	lncRNA gene	Chr4:123077145-123079091 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003563	antisense lncRNA gene	Chr4:118055917-118057904 (+)
CAST/EiJ	ENSTCUG00005046753	lncRNA gene	Chr4:122467171-122469166 (+)
CBA/J	ENSMUSG00210052889	lncRNA gene	Chr4:121210522-121212472 (+)
DBA/2J	ENSMUSG00185053543	lncRNA gene	Chr4:122743082-122745032 (+)
FVB/NJ	ENSMUSG00205028189	lncRNA gene	Chr4:120966553-120968499 (+)
JF1/MsJ	ENSUMUG00000048177	lncRNA gene	Chr4:123386307-123388306 (+)
LP/J	ENSMUSG00230039188	lncRNA gene	Chr4:126532271-126534217 (+)
NOD/ShiLtJ	ENSMUSG00190047495	lncRNA gene	Chr4:120971572-120973518 (+)
NZO/HlLtJ	ENSMUSG00225016204	lncRNA gene	Chr4:132448319-132450265 (+)
PWK/PhJ	ENSLUMG00010048238	lncRNA gene	Chr4:120424520-120426509 (+)
SPRET/EiJ	ENSMSPG00010046199	lncRNA gene	Chr4:122503845-122505842 (+)
WSB/EiJ	ENSIUOG00005048006	lncRNA gene	Chr4:120824059-120826005 (+)

Homology

• Gene Tree
  Hmgb4os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Hmgb4os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000085717 (Evidence)
• NCBI Gene
  75242

Representative Sequences			Length	Strain/Species
genomic	75242	NCBI Gene Model | MGI Sequence Detail	1947	C57BL/6J
transcript	NR_130980	RefSeq | MGI Sequence Detail	518	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12