4930543I11Rik Gene Detail

Summary

• Symbol
  4930543I11Rik
• Name
  RIKEN cDNA 4930543I11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922475
  NCBI Gene: 102635169
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:67621565-67622523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922475	lncRNA gene	Chr10:67621565-67624663 (+)
129S1/SvImJ	ENSMUSG00200017773	unclassified gene	Chr10:64318116-64319074 (+)
A/J	ENSMUSG00195006108	unclassified gene	Chr10:64612404-64613362 (+)
AKR/J	ENSMUSG00220030277	unclassified gene	Chr10:64281186-64282144 (+)
BALB/cJ	ENSMUSG00180007931	unclassified gene	Chr10:64646917-64647875 (+)
C3H/HeJ	ENSMUSG00175012809	unclassified gene	Chr10:64499445-64500403 (+)
C57BL/6NJ	ENSMUSG00215004066	unclassified gene	Chr10:64256473-64257431 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027302	unclassified gene	Chr10:64228455-64229413 (+)
CBA/J	ENSMUSG00210009800	unclassified gene	Chr10:64361254-64362212 (+)
DBA/2J	ENSMUSG00185020664	unclassified gene	Chr10:64724070-64725028 (+)
FVB/NJ	ENSMUSG00205007446	unclassified gene	Chr10:64425397-64426355 (+)
JF1/MsJ	ENSUMUG00000025115	unclassified gene	Chr10:65921300-65922258 (+)
LP/J	ENSMUSG00230019940	unclassified gene	Chr10:66490524-66491482 (+)
NOD/ShiLtJ	ENSMUSG00190007988	unclassified gene	Chr10:64719709-64720667 (+)
NZO/HlLtJ	ENSMUSG00225045191	unclassified gene	Chr10:70778740-70779698 (+)
PWK/PhJ	ENSLUMG00010007918	unclassified gene	Chr10:64317446-64318404 (+)
SPRET/EiJ	ENSMSPG00010022984	unclassified gene	Chr10:65974695-65975653 (+)
WSB/EiJ	ENSIUOG00005034762	unclassified gene	Chr10:64254864-64255822 (+)

Homology

• Gene Tree
  4930543I11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930543I11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000112537 (Evidence)
• NCBI Gene
  102635169

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112537	Ensembl Gene Model | MGI Sequence Detail	959	C57BL/6J
transcript	AK016030	GenBank | ENA | DDBJ | MGI Sequence Detail	962	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930543I11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93863	Chr10:67621573-67621585 (+)	14 bp