4930540E01Rik Gene Detail

Summary

• Symbol
  4930540E01Rik
• Name
  RIKEN cDNA 4930540E01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922424
  NCBI Gene: 102637419
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:100055054-100056199 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922424	lncRNA gene	Chr9:100055054-100078918 (-)
129S1/SvImJ	ENSMUSG00200016797	unclassified gene	Chr9:97180665-97181810 (-)
A/J	ENSMUSG00195019431	unclassified gene	Chr9:96418760-96419909 (-)
AKR/J	ENSMUSG00220040583	unclassified gene	Chr9:96781787-96782936 (-)
BALB/cJ	ENSMUSG00180025284	unclassified gene	Chr9:96735566-96736715 (-)
C3H/HeJ	ENSMUSG00175013848	unclassified gene	Chr9:97078303-97079452 (-)
C57BL/6NJ	ENSMUSG00215032494	unclassified gene	Chr9:97073446-97074592 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002056	unclassified gene	Chr9:95666289-95667438 (-)
CAST/EiJ	ENSTCUG00005013418	unclassified gene	Chr9:96876440-96878099 (-)
CBA/J	ENSMUSG00210015435	unclassified gene	Chr9:96911396-96912545 (-)
DBA/2J	ENSMUSG00185012742	unclassified gene	Chr9:97085628-97086777 (-)
FVB/NJ	ENSMUSG00205025088	unclassified gene	Chr9:97072576-97073722 (-)
JF1/MsJ	ENSUMUG00000042064	unclassified gene	Chr9:96878743-96879887 (-)
LP/J	ENSMUSG00230021913	unclassified gene	Chr9:97252329-97253474 (-)
NOD/ShiLtJ	ENSMUSG00190039997	unclassified gene	Chr9:96715654-96716802 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028042	unclassified gene	Chr9:96856257-96857400 (-)
SPRET/EiJ	ENSMSPG00010004186	unclassified gene	Chr9:98704426-98706071 (-)
WSB/EiJ	ENSIUOG00005024304	unclassified gene	Chr9:96165612-96166761 (-)

Homology

• Gene Tree
  4930540E01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930540E01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000103407 (Evidence)
• NCBI Gene
  102637419

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103407	Ensembl Gene Model | MGI Sequence Detail	1146	C57BL/6J
transcript	AK016008	GenBank | ENA | DDBJ | MGI Sequence Detail	1146	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:111226 Torres-Padilla ME, et al., Role of TIF1{alpha} as a modulator of embryonic transcription in the mouse zygote. J Cell Biol. 2006 Jul 31;174(3):329-38