4930526L06Rik Gene Detail

Summary

• Symbol
  4930526L06Rik
• Name
  RIKEN cDNA 4930526L06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922388
  NCBI Gene: 75138
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11174181-11277248 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 8.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  536 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922388	lncRNA gene	Chr19:11174181-11277256 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003473	antisense lncRNA gene	Chr19:8590440-8680218 (+)
A/J	MGP_AJ_G0003452	antisense lncRNA gene	Chr19:8030943-8120473 (+)
AKR/J	MGP_AKRJ_G0003432	antisense lncRNA gene	Chr19:8329022-8423504 (+)
BALB/cJ	MGP_BALBcJ_G0003441	antisense lncRNA gene	Chr19:8062285-8154935 (+)
C3H/HeJ	MGP_C3HHeJ_G0003390	antisense lncRNA gene	Chr19:8214118-8312389 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003579	antisense lncRNA gene	Chr19:8981926-9078438 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0003387	antisense lncRNA gene	Chr19:9025998-9124908 (+)
DBA/2J	MGP_DBA2J_G0003395	antisense lncRNA gene	Chr19:8019373-8112145 (+)
FVB/NJ	MGP_FVBNJ_G0003413	antisense lncRNA gene	Chr19:8052229-8142595 (+)
LP/J	MGP_LPJ_G0003467	antisense lncRNA gene	Chr19:8546652-8639568 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003401	antisense lncRNA gene	Chr19:8915206-9017821 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003582	antisense lncRNA gene	Chr19:8354984-8453605 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0003387	antisense lncRNA gene	Chr19:8247422-8348426 (+)

Homology

• Gene Tree
  4930526L06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000097091 (Evidence)
• NCBI Gene
  75138

Representative Sequences			Length	Strain/Species
genomic	75138	NCBI Gene Model | MGI Sequence Detail	103068	C57BL/6J
transcript	NR_045317	RefSeq | MGI Sequence Detail	1020	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930526L06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155156	Chr19:11269772-11269785 (+)	95,598 bp
Tssr155157	Chr19:11269787-11269801 (+)	95,613 bp