4930520O04Rik Gene Detail

Summary

• Symbol
  4930520O04Rik
• Name
  RIKEN cDNA 4930520O04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922366
  NCBI Gene: 75116
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:114197392-114206306 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 64.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  447 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922366	lncRNA gene	Chr9:114196960-114208127 (+)
129S1/SvImJ	ENSMUSG00200044623	lncRNA gene	Chr9:111294121-111303047 (+)
A/J	ENSMUSG00195045659	lncRNA gene	Chr9:110498691-110507672 (+)
AKR/J	ENSMUSG00220032212	lncRNA gene	Chr9:110956321-110965251 (+)
BALB/cJ	ENSMUSG00180035639	lncRNA gene	Chr9:111036395-111045378 (+)
C3H/HeJ	ENSMUSG00175047018	lncRNA gene	Chr9:111257458-111266436 (+)
C57BL/6NJ	ENSMUSG00215041827	lncRNA gene	Chr9:111142328-111151254 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037120	lncRNA gene	Chr9:110916602-110925671 (+)
CBA/J	ENSMUSG00210045716	lncRNA gene	Chr9:110978978-110987903 (+)
DBA/2J	ENSMUSG00185044239	lncRNA gene	Chr9:111315732-111324658 (+)
FVB/NJ	ENSMUSG00205049947	lncRNA gene	Chr9:111159139-111168121 (+)
JF1/MsJ	ENSUMUG00000055639	lncRNA gene	Chr9:111146536-111155796 (+)
LP/J	ENSMUSG00230050447	lncRNA gene	Chr9:111422891-111431817 (+)
NOD/ShiLtJ	ENSMUSG00190050753	lncRNA gene	Chr9:110908855-110917781 (+)
NZO/HlLtJ	ENSMUSG00225024570	lncRNA gene	Chr9:111704430-111713356 (+)
PWK/PhJ	ENSLUMG00010045874	lncRNA gene	Chr9:111096779-111106055 (+)
SPRET/EiJ	ENSMSPG00010024569	lncRNA gene	Chr9:112760841-112770164 (+)
WSB/EiJ	ENSIUOG00005047954	lncRNA gene	Chr9:110374351-110383289 (+)

Homology

• Gene Tree
  4930520O04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  59
• RefSeq
  2

• Ensembl
  ENSMUSG00000074039 (Evidence)
• NCBI Gene
  75116

Representative Sequences			Length	Strain/Species
genomic	75116	NCBI Gene Model | MGI Sequence Detail	8915	C57BL/6J
transcript	NR_040383	RefSeq | MGI Sequence Detail	1217	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930520O04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87556	Chr9:114197536-114197544 (+)	148 bp