4930506F14Rik Gene Detail

Summary

• Symbol
  4930506F14Rik
• Name
  RIKEN cDNA 4930506F14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922352
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:107749687-107750449 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922352	lncRNA gene	Chr9:107749687-107750449 (+)
129S1/SvImJ	ENSMUSG00200044463	lncRNA gene	Chr9:104948039-104948332 (+)
129S1/SvImJ	ENSMUSG00200043528	protein coding gene	Chr9:104947700-104960431 (+)
A/J	ENSMUSG00195037571	protein coding gene	Chr9:104166455-104179123 (+)
A/J	ENSMUSG00195046727	lncRNA gene	Chr9:104166794-104167087 (+)
AKR/J	ENSMUSG00220030611	lncRNA gene	Chr9:104553666-104553959 (+)
AKR/J	ENSMUSG00220024412	protein coding gene	Chr9:104553327-104566021 (+)
BALB/cJ	ENSMUSG00180036786	lncRNA gene	Chr9:104483305-104483598 (+)
BALB/cJ	ENSMUSG00180033373	protein coding gene	Chr9:104482966-104495638 (+)
C3H/HeJ	ENSMUSG00175043776	protein coding gene	Chr9:104825270-104837935 (+)
C3H/HeJ	ENSMUSG00175046170	lncRNA gene	Chr9:104825609-104825902 (+)
C57BL/6NJ	ENSMUSG00215042294	lncRNA gene	Chr9:104802742-104803035 (+)
C57BL/6NJ	ENSMUSG00215030689	protein coding gene	Chr9:104802403-104815084 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034918	lncRNA gene	Chr9:104576357-104576650 (+)
CBA/J	ENSMUSG00210047024	lncRNA gene	Chr9:104674412-104674705 (+)
DBA/2J	ENSMUSG00185037414	protein coding gene	Chr9:104834128-104846813 (+)
DBA/2J	ENSMUSG00185045196	lncRNA gene	Chr9:104834467-104834760 (+)
FVB/NJ	ENSMUSG00205048014	protein coding gene	Chr9:104836001-104848671 (+)
FVB/NJ	ENSMUSG00205049845	lncRNA gene	Chr9:104836340-104836633 (+)
JF1/MsJ	ENSUMUG00000055280	lncRNA gene	Chr9:104663613-104663906 (+)
LP/J	ENSMUSG00230050099	protein coding gene	Chr9:104976603-104989325 (+)
LP/J	ENSMUSG00230050605	lncRNA gene	Chr9:104976942-104977235 (+)
NOD/ShiLtJ	ENSMUSG00190048665	protein coding gene	Chr9:104473147-104485815 (+)
NOD/ShiLtJ	ENSMUSG00190050062	lncRNA gene	Chr9:104473486-104473779 (+)
NZO/HlLtJ	ENSMUSG00225024773	lncRNA gene	Chr9:105207767-105208060 (+)
NZO/HlLtJ	ENSMUSG00225023962	protein coding gene	Chr9:105207428-105220111 (+)
PWK/PhJ	ENSLUMG00010044190	lncRNA gene	Chr9:104620920-104621213 (+)
SPRET/EiJ	ENSMSPG00010047135	lncRNA gene	Chr9:106450701-106450993 (+)
WSB/EiJ	ENSIUOG00005048054	lncRNA gene	Chr9:103919916-103920209 (+)

Homology

• Gene Tree
  4930506F14Rik
  

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  33
• UniProt
  1

• Ensembl
  ENSMUSG00000121123 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121123	Ensembl Gene Model | MGI Sequence Detail	763	C57BL/6J
transcript	ENSMUST00000247212	Ensembl | MGI Sequence Detail	763	Not Applicable
polypeptide	Q9D573	UniProt | EBI | MGI Sequence Detail	129	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7338025

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930506F14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87026	Chr9:107750159-107750198 (+)	492 bp