4930517O19Rik Gene Detail

Summary

• Symbol
  4930517O19Rik
• Name
  RIKEN cDNA 4930517O19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922325
  NCBI Gene: 75075
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:100450563-100482775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 50.90 cM, cytoband E2.2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1362 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922325	lncRNA gene	Chr14:100432369-100486110 (+)
129S1/SvImJ	ENSMUSG00200019744	lncRNA gene	Chr14:88988019-89020296 (+)
A/J	ENSMUSG00195020283	lncRNA gene	Chr14:89155768-89188115 (+)
AKR/J	ENSMUSG00220002459	lncRNA gene	Chr14:88574292-88606655 (+)
BALB/cJ	ENSMUSG00180004563	lncRNA gene	Chr14:88638607-88670953 (+)
C3H/HeJ	ENSMUSG00175002694	lncRNA gene	Chr14:90504752-90537106 (+)
C57BL/6NJ	ENSMUSG00215018769	lncRNA gene	Chr14:88687886-88720226 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013413	unclassified non-coding RNA gene	Chr14:90487239-90520710 (+)
CAST/EiJ	ENSTCUG00005016622	lncRNA gene	Chr14:90128928-90160883 (+)
CBA/J	ENSMUSG00210007951	lncRNA gene	Chr14:89207999-89240337 (+)
DBA/2J	ENSMUSG00185011264	lncRNA gene	Chr14:94392055-94424414 (+)
FVB/NJ	ENSMUSG00205013905	lncRNA gene	Chr14:88296244-88328599 (+)
JF1/MsJ	ENSUMUG00000014439	lncRNA gene	Chr14:105357076-105389269 (+)
LP/J	ENSMUSG00230003875	lncRNA gene	Chr14:106231888-106264087 (+)
NOD/ShiLtJ	ENSMUSG00190009840	lncRNA gene	Chr14:88985649-89018010 (+)
NZO/HlLtJ	ENSMUSG00225025407	lncRNA gene	Chr14:96637807-96670006 (+)
PWK/PhJ	ENSLUMG00010004888	lncRNA gene	Chr14:88248814-88281171 (+)
SPRET/EiJ	ENSMSPG00010010315	lncRNA gene	Chr14:92157914-92189377 (+)
WSB/EiJ	ENSIUOG00005018299	lncRNA gene	Chr14:88176196-88208438 (+)

Homology

• Gene Tree
  4930517O19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4930517O19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000054391 (Evidence)
• NCBI Gene
  75075

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054391	Ensembl Gene Model | MGI Sequence Detail	32213	C57BL/6J
transcript	ENSMUST00000140320	Ensembl | MGI Sequence Detail	618	Not Applicable
polypeptide	Q9D540	UniProt | EBI | MGI Sequence Detail	106	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 4930517O19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126896	Chr14:100450612-100450617 (+)	52 bp
Tssr126897	Chr14:100450619-100450630 (+)	62 bp