4930517O19Rik Gene Detail

Summary

• Symbol
  4930517O19Rik
• Name
  RIKEN cDNA 4930517O19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922325
  NCBI Gene: 75075
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:100450578-100482775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 50.90 cM, cytoband E2.2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922325	lncRNA gene	Chr14:100432369-100486110 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015279	unclassified non-coding RNA gene	Chr14:96565285-96600524 (+)
A/J	MGP_AJ_G0015253	unclassified non-coding RNA gene	Chr14:93459849-93494278 (+)
AKR/J	MGP_AKRJ_G0015216	unclassified non-coding RNA gene	Chr14:96217332-96251714 (+)
BALB/cJ	MGP_BALBcJ_G0015217	unclassified non-coding RNA gene	Chr14:93798082-93832208 (+)
C3H/HeJ	MGP_C3HHeJ_G0015041	unclassified non-coding RNA gene	Chr14:96118278-96152336 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015672	unclassified non-coding RNA gene	Chr14:100503240-100547738 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013413	unclassified non-coding RNA gene	Chr14:90487239-90520710 (+)
CAST/EiJ	MGP_CASTEiJ_G0014592	unclassified non-coding RNA gene	Chr14:93413774-93452131 (+)
CBA/J	MGP_CBAJ_G0015021	unclassified non-coding RNA gene	Chr14:104228351-104263494 (+)
DBA/2J	MGP_DBA2J_G0015115	unclassified non-coding RNA gene	Chr14:92958058-92991559 (+)
FVB/NJ	MGP_FVBNJ_G0015122	unclassified non-coding RNA gene	Chr14:91982893-92016522 (+)
LP/J	MGP_LPJ_G0015195	unclassified non-coding RNA gene	Chr14:97372213-97408716 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015149	unclassified non-coding RNA gene	Chr14:106884999-106922330 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015711	unclassified non-coding RNA gene	Chr14:95740010-95774140 (+)
PWK/PhJ	MGP_PWKPhJ_G0014384	unclassified non-coding RNA gene	Chr14:89945742-89979559 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014171	unclassified non-coding RNA gene	Chr14:91725886-91759248 (+)
WSB/EiJ	MGP_WSBEiJ_G0014699	unclassified non-coding RNA gene	Chr14:96351886-96387751 (+)

Homology

• Gene Tree
  4930517O19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving 4930517O19Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000054391 (Evidence)
• NCBI Gene
  75075

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054391	Ensembl Gene Model | MGI Sequence Detail	32198	C57BL/6J
transcript	ENSMUST00000140320	Ensembl | MGI Sequence Detail	603	Not Applicable
polypeptide	Q9D540	UniProt | EBI | MGI Sequence Detail	106	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 4930517O19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126896	Chr14:100450612-100450617 (+)	37 bp
Tssr126897	Chr14:100450619-100450630 (+)	47 bp