Nudt12os Gene Detail

Summary

• Symbol
  Nudt12os
• Name
  nudix hydrolase 12, opposite strand
• Synonyms
  4930505H01Rik, nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922289
  NCBI Gene: 75039
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:59303246-59331976 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 30.63 cM, cytoband E1.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1054 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922289	antisense lncRNA gene	Chr17:59253145-59372633 (+)
129S1/SvImJ	ENSMUSG00200016536	protein coding gene	Chr17:54593893-54622580 (+)
129S1/SvImJ	ENSMUSG00200016781	lncRNA gene	Chr17:54593888-54622620 (+)
A/J	ENSMUSG00195006851	protein coding gene	Chr17:55975843-56004530 (+)
A/J	ENSMUSG00195007278	lncRNA gene	Chr17:55975838-56004570 (+)
AKR/J	ENSMUSG00220013637	lncRNA gene	Chr17:55025251-55053980 (+)
AKR/J	ENSMUSG00220013191	protein coding gene	Chr17:55025256-55053940 (+)
BALB/cJ	ENSMUSG00180005605	protein coding gene	Chr17:55722171-55750861 (+)
BALB/cJ	ENSMUSG00180006537	lncRNA gene	Chr17:55722166-55750901 (+)
C3H/HeJ	ENSMUSG00175007350	protein coding gene	Chr17:55041159-55069844 (+)
C3H/HeJ	ENSMUSG00175007766	lncRNA gene	Chr17:55041154-55069884 (+)
C57BL/6NJ	ENSMUSG00215009729	lncRNA gene	Chr17:54669846-54698579 (+)
C57BL/6NJ	ENSMUSG00215007277	protein coding gene	Chr17:54669851-54698539 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003039	antisense lncRNA gene	Chr17:55484759-55513460 (+)
CAST/EiJ	ENSTCUG00005019556	lncRNA gene	Chr17:55679856-55708829 (+)
CBA/J	ENSMUSG00210026713	protein coding gene	Chr17:54820011-54848701 (+)
CBA/J	ENSMUSG00210029218	lncRNA gene	Chr17:54820006-54848741 (+)
DBA/2J	ENSMUSG00185008509	protein coding gene	Chr17:57678443-57707129 (+)
DBA/2J	ENSMUSG00185009345	lncRNA gene	Chr17:57678438-57707169 (+)
FVB/NJ	ENSMUSG00205006443	protein coding gene	Chr17:55330341-55359034 (+)
FVB/NJ	ENSMUSG00205007529	lncRNA gene	Chr17:55330336-55359074 (+)
JF1/MsJ	ENSUMUG00000034687	lncRNA gene	Chr17:57372232-57400737 (+)
LP/J	ENSMUSG00230029421	lncRNA gene	Chr17:58650436-58679166 (+)
LP/J	ENSMUSG00230024656	protein coding gene	Chr17:58650441-58679126 (+)
NOD/ShiLtJ	ENSMUSG00190009426	protein coding gene	Chr17:54811072-54839759 (+)
NOD/ShiLtJ	ENSMUSG00190011783	lncRNA gene	Chr17:54811067-54839799 (+)
NZO/HlLtJ	ENSMUSG00225026442	lncRNA gene	Chr17:60940726-60969457 (+)
NZO/HlLtJ	ENSMUSG00225025498	protein coding gene	Chr17:60940731-60969417 (+)
PWK/PhJ	ENSLUMG00010009652	lncRNA gene	Chr17:54624996-54653537 (+)
SPRET/EiJ	ENSMSPG00010006013	lncRNA gene	Chr17:54948418-54975522 (+)
WSB/EiJ	ENSIUOG00005023953	lncRNA gene	Chr17:55681166-55709906 (+)

Homology

• Gene Tree
  Nudt12os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000086594 (Evidence)
• NCBI Gene
  75039

Representative Sequences			Length	Strain/Species
genomic	75039	NCBI Gene Model | MGI Sequence Detail	28731	C57BL/6J
transcript	NR_145522	RefSeq | MGI Sequence Detail	939	C57BL/6
polypeptide	Q3V0W3	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Nudt12os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145530	Chr17:59303238-59303273 (+)	10 bp