4930470O06Rik MGI Mouse Gene Detail - MGI:1922267

Sequence Map

Chr8:60278683-60297755 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922267	lncRNA gene	Chr8:60278669-60363175 (+)
129S1/SvImJ	ENSMUSG00200007409	lncRNA gene	Chr8:55090408-55110760 (+)
A/J	ENSMUSG00195012401	lncRNA gene	Chr8:55445810-55458466 (+)
AKR/J	ENSMUSG00220005722	lncRNA gene	Chr8:55265800-55282136 (+)
BALB/cJ	ENSMUSG00180014312	lncRNA gene	Chr8:55081632-55100664 (+)
C3H/HeJ	ENSMUSG00175007627	lncRNA gene	Chr8:55285317-55304345 (+)
C57BL/6NJ	ENSMUSG00215010822	lncRNA gene	Chr8:55092608-55111685 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006763	lncRNA gene	Chr8:54971970-54984595 (+)
CBA/J	ENSMUSG00210009537	lncRNA gene	Chr8:55169553-55188585 (+)
DBA/2J	ENSMUSG00185023277	lncRNA gene	Chr8:61240944-61259971 (+)
FVB/NJ	ENSMUSG00205011534	lncRNA gene	Chr8:54487004-54505714 (+)
JF1/MsJ	ENSUMUG00000015397	lncRNA gene	Chr8:63575459-63588252 (+)
LP/J	ENSMUSG00230006980	lncRNA gene	Chr8:64899683-64918711 (+)
NOD/ShiLtJ	ENSMUSG00190009818	lncRNA gene	Chr8:55049951-55062604 (+)
NZO/HlLtJ	ENSMUSG00225031137	lncRNA gene	Chr8:68335647-68354675 (+)
PWK/PhJ	ENSLUMG00010013050	lncRNA gene	Chr8:54956694-54969461 (+)
SPRET/EiJ	ENSMSPG00010014597	lncRNA gene	Chr8:56109835-56122673 (+)
WSB/EiJ	ENSIUOG00005017636	lncRNA gene	Chr8:55983250-56002291 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	75017	NCBI Gene Model \| MGI Sequence Detail	19073	C57BL/6J	± kb
	transcript	NR_126087	RefSeq \| MGI Sequence Detail	660	ZRU/MplStud

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Summaries

All 9

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930470O06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77443	Chr8:60278695-60278715 (+)	22 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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