4930480C01Rik Gene Detail

Summary

• Symbol
  4930480C01Rik
• Name
  RIKEN cDNA 4930480C01 gene
• Synonyms
  Gm43770

• Feature Type
  lncRNA gene
• IDs
  MGI:1922236
  NCBI Gene: 102635219
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:66108648-66109548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922236	lncRNA gene	Chr5:66108648-66109548 (+)
129S1/SvImJ	ENSMUSG00200036051	unclassified gene	Chr5:61726878-61727778 (+)
A/J	ENSMUSG00195035224	unclassified gene	Chr5:61104143-61105043 (+)
AKR/J	ENSMUSG00220004356	unclassified gene	Chr5:61238338-61239238 (+)
BALB/cJ	ENSMUSG00180006301	unclassified gene	Chr5:60889972-60890872 (+)
C3H/HeJ	ENSMUSG00175028123	unclassified gene	Chr5:62924010-62924910 (+)
C57BL/6NJ	ENSMUSG00215005957	unclassified gene	Chr5:61655790-61656690 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001363	unclassified gene	Chr5:59253473-59254380 (+)
CAST/EiJ	ENSTCUG00005031406	unclassified gene	Chr5:60806772-60807677 (+)
CBA/J	ENSMUSG00210023493	unclassified gene	Chr5:61836944-61837844 (+)
DBA/2J	ENSMUSG00185005667	unclassified gene	Chr5:63694439-63695339 (+)
FVB/NJ	ENSMUSG00205011274	unclassified gene	Chr5:60638083-60638983 (+)
JF1/MsJ	ENSUMUG00000022140	unclassified gene	Chr5:68168980-68169885 (+)
LP/J	ENSMUSG00230009343	unclassified gene	Chr5:68339612-68340512 (+)
NOD/ShiLtJ	ENSMUSG00190004200	unclassified gene	Chr5:60829111-60830011 (+)
NZO/HlLtJ	ENSMUSG00225010801	unclassified gene	Chr5:73465334-73466234 (+)
PWK/PhJ	ENSLUMG00010014752	unclassified gene	Chr5:60771575-60772472 (+)
SPRET/EiJ	ENSMSPG00010034664	unclassified gene	Chr5:62585140-62586046 (+)
WSB/EiJ	ENSIUOG00005018267	unclassified gene	Chr5:63782011-63782911 (+)

Homology

• Gene Tree
  4930480C01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 4930480C01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106768 (Evidence)
• NCBI Gene
  102635219

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106768	Ensembl Gene Model | MGI Sequence Detail	901	C57BL/6J
transcript	AK015596	GenBank | ENA | DDBJ | MGI Sequence Detail	901	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663907

References

• Summaries
  All 25

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707