4930465K09Rik Gene Detail

Summary

• Symbol
  4930465K09Rik
• Name
  RIKEN cDNA 4930465K09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922230
  NCBI Gene: 74980
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:32619890-32623651 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922230	lncRNA gene	Chr15:32619890-32623651 (-)
129S1/SvImJ	ENSMUSG00200028100	lncRNA gene	Chr15:29709579-29713356 (-)
A/J	ENSMUSG00195014698	lncRNA gene	Chr15:29545778-29549532 (-)
AKR/J	ENSMUSG00220048108	lncRNA gene	Chr15:29436794-29440555 (-)
BALB/cJ	ENSMUSG00180005750	lncRNA gene	Chr15:29502537-29506291 (-)
C3H/HeJ	ENSMUSG00175004914	lncRNA gene	Chr15:29678896-29682656 (-)
C57BL/6NJ	ENSMUSG00215005359	lncRNA gene	Chr15:29531513-29535272 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015280	lncRNA gene	Chr15:29615858-29619615 (-)
CBA/J	ENSMUSG00210024813	lncRNA gene	Chr15:29632555-29636314 (-)
DBA/2J	ENSMUSG00185023897	lncRNA gene	Chr15:29617858-29621618 (-)
FVB/NJ	ENSMUSG00205015107	lncRNA gene	Chr15:29502859-29506613 (-)
JF1/MsJ	ENSUMUG00000014067	lncRNA gene	Chr15:29628315-29632092 (-)
LP/J	ENSMUSG00230013089	lncRNA gene	Chr15:33106134-33109914 (-)
NOD/ShiLtJ	ENSMUSG00190012514	lncRNA gene	Chr15:29607145-29610906 (-)
NZO/HlLtJ	ENSMUSG00225032320	lncRNA gene	Chr15:33313914-33317675 (-)
PWK/PhJ	ENSLUMG00010022787	lncRNA gene	Chr15:29786464-29790226 (-)
SPRET/EiJ	ENSMSPG00010024097	lncRNA gene	Chr15:30321077-30324817 (-)
WSB/EiJ	ENSIUOG00005021601	lncRNA gene	Chr15:29637622-29641375 (-)

Homology

• Gene Tree
  4930465K09Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000115063 (Evidence)
• NCBI Gene
  74980

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115063	Ensembl Gene Model | MGI Sequence Detail	3762	C57BL/6J
transcript	ENSMUST00000309862	Ensembl | MGI Sequence Detail	577	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930465K09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133951	Chr15:32623647-32623654 (-)	0 bp