4930500F04Rik Gene Detail

Summary

• Symbol
  4930500F04Rik
• Name
  RIKEN cDNA 4930500F04 gene
• Synonyms
  4931407C17Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922182
  NCBI Gene: 70969
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:149771212-149787745 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  519 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922182	lncRNA gene	Chr5:149771118-149834332 (+)
129S1/SvImJ	ENSMUSG00200011546	lncRNA gene	Chr5:143613825-143630380 (+)
A/J	ENSMUSG00195005207	lncRNA gene	Chr5:143222356-143238901 (+)
AKR/J	ENSMUSG00220015410	lncRNA gene	Chr5:142224512-142241028 (+)
BALB/cJ	ENSMUSG00180003279	lncRNA gene	Chr5:143624704-143641249 (+)
C3H/HeJ	ENSMUSG00175012502	lncRNA gene	Chr5:145465478-145482026 (+)
C57BL/6NJ	ENSMUSG00215000123	lncRNA gene	Chr5:143162528-143179061 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013746	unclassified non-coding RNA gene	Chr5:143413691-143430291 (+)
CAST/EiJ	ENSTCUG00005010327	lncRNA gene	Chr5:142744431-142760948 (+)
CBA/J	ENSMUSG00210000928	lncRNA gene	Chr5:144352617-144369160 (+)
DBA/2J	ENSMUSG00185042474	lncRNA gene	Chr5:147322752-147339289 (+)
FVB/NJ	ENSMUSG00205000160	lncRNA gene	Chr5:143003563-143020107 (+)
JF1/MsJ	ENSUMUG00000053832	lncRNA gene	Chr5:149815109-149831569 (+)
LP/J	ENSMUSG00230029891	lncRNA gene	Chr5:151330460-151347011 (+)
NOD/ShiLtJ	ENSMUSG00190006015	lncRNA gene	Chr5:142977650-142994193 (+)
NZO/HlLtJ	ENSMUSG00225009391	lncRNA gene	Chr5:159068532-159085079 (+)
PWK/PhJ	ENSLUMG00010000439	lncRNA gene	Chr5:142087042-142103483 (+)
SPRET/EiJ	ENSMSPG00010007070	lncRNA gene	Chr5:144869140-144885670 (+)
WSB/EiJ	ENSIUOG00005014233	lncRNA gene	Chr5:145747599-145764132 (+)

Homology

• Gene Tree
  4930500F04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  1

• Ensembl
  ENSMUSG00000107214 (Evidence)
• NCBI Gene
  70969

Representative Sequences			Length	Strain/Species
genomic	70969	NCBI Gene Model | MGI Sequence Detail	16534	C57BL/6J
transcript	NR_045758	RefSeq | MGI Sequence Detail	576	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1918219

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930500F04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49927	Chr5:149771220-149771230 (+)	13 bp