4930473H19Rik Gene Detail

Summary

• Symbol
  4930473H19Rik
• Name
  RIKEN cDNA 4930473H19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922176
  NCBI Gene: 74926
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:88400881-88409003 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  403 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922176	lncRNA gene	Chr12:88400881-88409054 (-)
129S1/SvImJ	ENSMUSG00200051057	lncRNA gene	Chr12:80166226-80174344 (-)
A/J	ENSMUSG00195035420	lncRNA gene	Chr12:82825620-82833740 (-)
AKR/J	ENSMUSG00220049799	lncRNA gene	Chr12:80482643-80490763 (-)
BALB/cJ	ENSMUSG00180016469	lncRNA gene	Chr12:81972404-81980545 (-)
C3H/HeJ	ENSMUSG00175039458	lncRNA gene	Chr12:84593528-84601646 (-)
C57BL/6NJ	ENSMUSG00215046733	lncRNA gene	Chr12:81169693-81177836 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033069	lncRNA gene	Chr12:81041422-81049560 (-)
CBA/J	ENSMUSG00210019097	lncRNA gene	Chr12:81569120-81577240 (-)
DBA/2J	ENSMUSG00185003043	lncRNA gene	Chr12:83420982-83429100 (-)
FVB/NJ	ENSMUSG00205044354	lncRNA gene	Chr12:80782531-80790652 (-)
JF1/MsJ	ENSUMUG00000052297	lncRNA gene	Chr12:88095958-88104112 (-)
LP/J	ENSMUSG00230047600	lncRNA gene	Chr12:90483051-90491169 (-)
NOD/ShiLtJ	ENSMUSG00190039979	lncRNA gene	Chr12:104570992-104579105 (+)
NZO/HlLtJ	ENSMUSG00225053071	lncRNA gene	Chr12:92265329-92273470 (-)
PWK/PhJ	ENSLUMG00010003502	lncRNA gene	Chr12:81586006-81594159 (-)
SPRET/EiJ	ENSMSPG00010001136	lncRNA gene	Chr12:83926513-83934685 (-)
WSB/EiJ	ENSIUOG00005047133	lncRNA gene	Chr12:80800852-80808975 (-)

Homology

• Gene Tree
  4930473H19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930473H19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000113087 (Evidence)
• NCBI Gene
  74926

Representative Sequences			Length	Strain/Species
genomic	74926	NCBI Gene Model | MGI Sequence Detail	8123	C57BL/6J
transcript	NR_166711	RefSeq | MGI Sequence Detail	1016	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930473H19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117185	Chr12:88408990-88409027 (-)	-6 bp