Saxo1os Gene Detail

Summary

• Symbol
  Saxo1os
• Name
  stabilizer of axonemal microtubules 1, opposite strand
• Synonyms
  4930457A20Rik, Fam154aos

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922138
  NCBI Gene: 74888
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:86476681-86478041 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 40.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922138	antisense lncRNA gene	Chr4:86476606-86478307 (+)
129S1/SvImJ	ENSMUSG00200001014	lncRNA gene	Chr4:81425760-81427113 (+)
A/J	ENSMUSG00195009448	lncRNA gene	Chr4:82005072-82006425 (+)
AKR/J	ENSMUSG00220008139	lncRNA gene	Chr4:81397966-81399324 (+)
BALB/cJ	ENSMUSG00180008437	lncRNA gene	Chr4:80969995-80971348 (+)
C3H/HeJ	ENSMUSG00175004169	lncRNA gene	Chr4:81892439-81893792 (+)
C57BL/6NJ	ENSMUSG00215020457	lncRNA gene	Chr4:81849079-81850437 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003519	antisense lncRNA gene	Chr4:79407484-79408825 (+)
CAST/EiJ	ENSTCUG00005000950	lncRNA gene	Chr4:81295297-81296676 (+)
CBA/J	ENSMUSG00210001355	lncRNA gene	Chr4:81479165-81480518 (+)
DBA/2J	ENSMUSG00185000785	lncRNA gene	Chr4:82086782-82088135 (+)
FVB/NJ	ENSMUSG00205001470	lncRNA gene	Chr4:80365997-80367355 (+)
JF1/MsJ	ENSUMUG00000003399	lncRNA gene	Chr4:82352846-82354191 (+)
LP/J	ENSMUSG00230018311	lncRNA gene	Chr4:85507057-85508410 (+)
NOD/ShiLtJ	ENSMUSG00190000943	lncRNA gene	Chr4:80927602-80928960 (+)
NZO/HlLtJ	ENSMUSG00225005468	lncRNA gene	Chr4:90595953-90597306 (+)
PWK/PhJ	ENSLUMG00010001701	lncRNA gene	Chr4:80193431-80194776 (+)
SPRET/EiJ	ENSMSPG00010015937	lncRNA gene	Chr4:81940408-81941782 (+)
WSB/EiJ	ENSIUOG00005010002	lncRNA gene	Chr4:81290939-81292288 (+)

Homology

• Gene Tree
  Saxo1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  5 involving Saxo1os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  604
• Tissues
  4
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000085108 (Evidence)
• NCBI Gene
  74888

Representative Sequences			Length	Strain/Species
genomic	74888	NCBI Gene Model | MGI Sequence Detail	1361	C57BL/6J
transcript	NR_131920	RefSeq | MGI Sequence Detail	630	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Saxo1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1220	Chr4:86476631-86476635 (+)	-48 bp
Tssr37727	Chr4:86476667-86476685 (+)	-5 bp