4930444E06Rik Gene Detail

Summary

• Symbol
  4930444E06Rik
• Name
  RIKEN cDNA 4930444E06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922124
  NCBI Gene: 74874
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:144085161-144086769 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 70.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922124	lncRNA gene	Chr2:144085161-144086769 (+)
129S1/SvImJ	ENSMUSG00200007487	lncRNA gene	Chr2:141152444-141154072 (+)
A/J	ENSMUSG00195016424	lncRNA gene	Chr2:141329138-141330744 (+)
AKR/J	ENSMUSG00220038768	lncRNA gene	Chr2:140870443-140872051 (+)
BALB/cJ	ENSMUSG00180029316	lncRNA gene	Chr2:140985274-140986882 (+)
C3H/HeJ	ENSMUSG00175034062	lncRNA gene	Chr2:141532421-141534027 (+)
C57BL/6NJ	ENSMUSG00215020893	lncRNA gene	Chr2:141041238-141042850 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003272	antisense lncRNA gene	Chr2:136499700-136501248 (+)
CAST/EiJ	ENSTCUG00005011185	lncRNA gene	Chr2:140187292-140188890 (+)
CBA/J	ENSMUSG00210039364	lncRNA gene	Chr2:141451659-141453269 (+)
DBA/2J	ENSMUSG00185041052	lncRNA gene	Chr2:141030767-141032393 (+)
FVB/NJ	ENSMUSG00205026762	lncRNA gene	Chr2:140208257-140209855 (+)
JF1/MsJ	ENSUMUG00000034885	lncRNA gene	Chr2:140831577-140833203 (+)
LP/J	ENSMUSG00230009287	lncRNA gene	Chr2:142734910-142736536 (+)
NOD/ShiLtJ	ENSMUSG00190033239	lncRNA gene	Chr2:141123904-141125514 (+)
NZO/HlLtJ	ENSMUSG00225001374	lncRNA gene	Chr2:150722964-150724590 (+)
PWK/PhJ	ENSLUMG00010040711	lncRNA gene	Chr2:140874054-140875714 (+)
SPRET/EiJ	ENSMSPG00010028453	lncRNA gene	Chr2:143361018-143362645 (+)
WSB/EiJ	ENSIUOG00005024809	lncRNA gene	Chr2:140901392-140902988 (+)

Homology

• Gene Tree
  4930444E06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930444E06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085127 (Evidence)
• NCBI Gene
  74874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085127	Ensembl Gene Model | MGI Sequence Detail	1609	C57BL/6J
transcript	ENSMUST00000146746	Ensembl | MGI Sequence Detail	1240	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573