4930404K13Rik Gene Detail

Summary

• Symbol
  4930404K13Rik
• Name
  RIKEN cDNA 4930404K13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922095
  NCBI Gene: 74845
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:120036350-120054992 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  675 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922095	lncRNA gene	Chr14:120035852-120056641 (+)
129S1/SvImJ	ENSMUSG00200025006	lncRNA gene	Chr14:108910281-108928877 (+)
A/J	ENSMUSG00195032889	lncRNA gene	Chr14:108666087-108684672 (+)
AKR/J	ENSMUSG00220008031	lncRNA gene	Chr14:108462014-108480600 (+)
BALB/cJ	ENSMUSG00180030112	lncRNA gene	Chr14:108157974-108176560 (+)
C3H/HeJ	ENSMUSG00175005791	lncRNA gene	Chr14:110097494-110116069 (+)
C57BL/6NJ	ENSMUSG00215028479	lncRNA gene	Chr14:108302944-108321544 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007233	lncRNA gene	Chr14:109740086-109759092 (+)
CBA/J	ENSMUSG00210027491	lncRNA gene	Chr14:109058575-109077144 (+)
DBA/2J	ENSMUSG00185014369	lncRNA gene	Chr14:114215082-114233654 (+)
FVB/NJ	ENSMUSG00205008540	lncRNA gene	Chr14:107770998-107789577 (+)
JF1/MsJ	ENSUMUG00000029352	lncRNA gene	Chr14:125240695-125260298 (+)
LP/J	ENSMUSG00230013330	lncRNA gene	Chr14:126198216-126216781 (+)
NOD/ShiLtJ	ENSMUSG00190026527	lncRNA gene	Chr14:108872236-108890819 (+)
NZO/HlLtJ	ENSMUSG00225029337	lncRNA gene	Chr14:116240318-116258888 (+)
PWK/PhJ	ENSLUMG00010030344	lncRNA gene	Chr14:108151784-108171406 (+)
SPRET/EiJ	ENSMSPG00010012517	lncRNA gene	Chr14:112388275-112407881 (+)
WSB/EiJ	ENSIUOG00005031598	lncRNA gene	Chr14:108081429-108100017 (+)

Homology

• Gene Tree
  4930404K13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930404K13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000115639 (Evidence)
• NCBI Gene
  74845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115639	Ensembl Gene Model | MGI Sequence Detail	18643	C57BL/6J
transcript	ENSMUST00000370216	Ensembl | MGI Sequence Detail	1153	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573