4930512B01Rik Gene Detail

Summary

• Symbol
  4930512B01Rik
• Name
  RIKEN cDNA 4930512B01 gene
• Synonyms
  4930472D12Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921974
  NCBI Gene: 74724
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:69837118-69888654 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 28.94 cM, cytoband C3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1381 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921974	lncRNA gene	Chr12:69837045-69889773 (+)
129S1/SvImJ	ENSMUSG00200032276	lncRNA gene	Chr12:61756673-61806929 (+)
129S1/SvImJ	ENSMUSG00200031091	protein coding gene	Chr12:61757265-61760990 (+)
A/J	ENSMUSG00195014407	lncRNA gene	Chr12:64446535-64496760 (+)
A/J	ENSMUSG00195012949	protein coding gene	Chr12:64447127-64450846 (+)
AKR/J	ENSMUSG00220015178	lncRNA gene	Chr12:62247115-62297362 (+)
AKR/J	ENSMUSG00220014593	protein coding gene	Chr12:62247707-62251432 (+)
BALB/cJ	ENSMUSG00180034947	lncRNA gene	Chr12:63445599-63495820 (+)
BALB/cJ	ENSMUSG00180032536	protein coding gene	Chr12:63446191-63449910 (+)
C3H/HeJ	ENSMUSG00175025744	protein coding gene	Chr12:66540606-66544325 (+)
C3H/HeJ	ENSMUSG00175031227	lncRNA gene	Chr12:66540014-66590240 (+)
C57BL/6NJ	ENSMUSG00215016862	protein coding gene	Chr12:62826584-62830312 (+)
C57BL/6NJ	ENSMUSG00215033051	lncRNA gene	Chr12:62825992-62876188 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002782	antisense lncRNA gene	Chr12:64453518-64503850 (+)
CAST/EiJ	ENSTCUG00005037293	lncRNA gene	Chr12:62788797-62838859 (+)
CBA/J	ENSMUSG00210029663	protein coding gene	Chr12:63010631-63014350 (+)
CBA/J	ENSMUSG00210031408	lncRNA gene	Chr12:63010039-63060262 (+)
DBA/2J	ENSMUSG00185004865	lncRNA gene	Chr12:64909422-64959653 (+)
DBA/2J	ENSMUSG00185004332	protein coding gene	Chr12:64910014-64913742 (+)
FVB/NJ	ENSMUSG00205038197	lncRNA gene	Chr12:62651515-62701751 (+)
FVB/NJ	ENSMUSG00205017302	protein coding gene	Chr12:62652107-62655837 (+)
JF1/MsJ	ENSUMUG00000029927	lncRNA gene	Chr12:68875389-68925724 (+)
LP/J	ENSMUSG00230022879	lncRNA gene	Chr12:71874803-71925049 (+)
LP/J	ENSMUSG00230015709	protein coding gene	Chr12:71875395-71879120 (+)
NOD/ShiLtJ	ENSMUSG00190010723	protein coding gene	Chr12:62064141-62067866 (+)
NOD/ShiLtJ	ENSMUSG00190013009	lncRNA gene	Chr12:62063549-62113793 (+)
NZO/HlLtJ	ENSMUSG00225037647	protein coding gene	Chr12:73959315-73963041 (+)
NZO/HlLtJ	ENSMUSG00225038530	lncRNA gene	Chr12:73958723-74008975 (+)
PWK/PhJ	ENSLUMG00010032583	lncRNA gene	Chr12:62956552-63001363 (+)
SPRET/EiJ	ENSMSPG00010031688	lncRNA gene	Chr12:64635705-64685581 (+)
WSB/EiJ	ENSIUOG00005012464	lncRNA gene	Chr12:62697255-62747519 (+)

Homology

• Gene Tree
  4930512B01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  9
• Genomic Mutations
  1 involving 4930512B01Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000020992 (Evidence)
• NCBI Gene
  74724

Representative Sequences			Length	Strain/Species
genomic	74724	NCBI Gene Model | MGI Sequence Detail	51537	C57BL/6J
transcript	NR_033573	RefSeq | MGI Sequence Detail	1421	C57BL/6
polypeptide	Q9D556	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1922163

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582