4930507D05Rik Gene Detail

Summary

• Symbol
  4930507D05Rik
• Name
  RIKEN cDNA 4930507D05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921956
  NCBI Gene: 74706
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:62285268-62287132 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921956	lncRNA gene	Chr10:62284939-62287132 (+)
129S1/SvImJ	ENSMUSG00200028774	lncRNA gene	Chr10:58957859-58959723 (+)
A/J	ENSMUSG00195029145	lncRNA gene	Chr10:59265182-59267046 (+)
AKR/J	ENSMUSG00220042682	lncRNA gene	Chr10:58958519-58960383 (+)
BALB/cJ	ENSMUSG00180028979	lncRNA gene	Chr10:59307477-59309341 (+)
C3H/HeJ	ENSMUSG00175026192	lncRNA gene	Chr10:59165074-59166938 (+)
C57BL/6NJ	ENSMUSG00215033639	lncRNA gene	Chr10:58905604-58907468 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015384	protein coding gene	Chr10:56954064-56955891 (+)
CAST/EiJ	ENSTCUG00005030325	lncRNA gene	Chr10:58960050-58961925 (+)
CBA/J	ENSMUSG00210036843	lncRNA gene	Chr10:59043383-59045247 (+)
DBA/2J	ENSMUSG00185043769	lncRNA gene	Chr10:59384944-59386808 (+)
FVB/NJ	ENSMUSG00205038175	lncRNA gene	Chr10:59058532-59060396 (+)
JF1/MsJ	ENSUMUG00000022181	lncRNA gene	Chr10:60621354-60623229 (+)
LP/J	ENSMUSG00230019514	lncRNA gene	Chr10:61187905-61189769 (+)
NOD/ShiLtJ	ENSMUSG00190041272	lncRNA gene	Chr10:59370562-59372426 (+)
NZO/HlLtJ	ENSMUSG00225045623	lncRNA gene	Chr10:65468879-65470743 (+)
PWK/PhJ	ENSLUMG00010023805	lncRNA gene	Chr10:59004022-59005895 (+)
SPRET/EiJ	ENSMSPG00010027302	lncRNA gene	Chr10:60573752-60575626 (+)
WSB/EiJ	ENSIUOG00005042712	lncRNA gene	Chr10:58939957-58941832 (+)

Homology

• Gene Tree
  4930507D05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  10
• Find Mice (IMSR)
  16 strains or lines available

Expression

• Assay Results
  640
• Tissues
  29
• cDNA Data
  6
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097129 (Evidence)
• NCBI Gene
  74706

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097129	Ensembl Gene Model | MGI Sequence Detail	1865	C57BL/6J
transcript	ENSMUST00000238598	Ensembl | MGI Sequence Detail	1865	Not Applicable
polypeptide	Q8C9C9	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9