4930524O08Rik Gene Detail

Summary

• Symbol
  4930524O08Rik
• Name
  RIKEN cDNA 4930524O08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921950
  NCBI Gene: 74700
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:89708572-89746081 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  873 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921950	lncRNA gene	Chr9:89708553-89746909 (+)
129S1/SvImJ	ENSMUSG00200005719	lncRNA gene	Chr9:86834620-86872125 (+)
A/J	ENSMUSG00195007854	lncRNA gene	Chr9:86101944-86139453 (+)
AKR/J	ENSMUSG00220020698	lncRNA gene	Chr9:86518929-86556443 (+)
BALB/cJ	ENSMUSG00180007367	lncRNA gene	Chr9:86428546-86466054 (+)
C3H/HeJ	ENSMUSG00175004761	lncRNA gene	Chr9:86740063-86777570 (+)
C57BL/6NJ	ENSMUSG00215011901	lncRNA gene	Chr9:86716178-86753693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006804	lincRNA gene	Chr9:85799362-85811649 (+)
CAST/EiJ	ENSTCUG00005004171	lncRNA gene	Chr9:86671118-86708802 (+)
CBA/J	ENSMUSG00210006008	lncRNA gene	Chr9:86590394-86626061 (+)
DBA/2J	ENSMUSG00185002320	lncRNA gene	Chr9:86737938-86773580 (+)
FVB/NJ	ENSMUSG00205004869	lncRNA gene	Chr9:86898561-86934191 (+)
JF1/MsJ	ENSUMUG00000028997	lncRNA gene	Chr9:86542035-86579673 (+)
LP/J	ENSMUSG00230010191	lncRNA gene	Chr9:86941117-86978624 (+)
NOD/ShiLtJ	ENSMUSG00190011577	lncRNA gene	Chr9:86382399-86419923 (+)
NZO/HlLtJ	ENSMUSG00225016145	lncRNA gene	Chr9:87038822-87074464 (+)
PWK/PhJ	ENSLUMG00010003057	lncRNA gene	Chr9:86453054-86491409 (+)
SPRET/EiJ	ENSMSPG00010002874	lncRNA gene	Chr9:88083420-88121214 (+)
WSB/EiJ	ENSIUOG00005003747	lncRNA gene	Chr9:85753071-85794055 (+)

Homology

• Gene Tree
  4930524O08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930524O08Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  1

• Ensembl
  ENSMUSG00000098627 (Evidence)
• NCBI Gene
  74700

Representative Sequences			Length	Strain/Species
genomic	74700	NCBI Gene Model | MGI Sequence Detail	37510	C57BL/6J
transcript	NR_040735	RefSeq | MGI Sequence Detail	1451	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930524O08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86440	Chr9:89709001-89709010 (+)	434 bp