4930519A11Rik Gene Detail

Summary

• Symbol
  4930519A11Rik
• Name
  RIKEN cDNA 4930519A11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921946
  NCBI Gene: 74696
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:12952721-12957385 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 6.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921946	lncRNA gene	Chr12:12952721-12957385 (+)
129S1/SvImJ	ENSMUSG00200023938	lncRNA gene	Chr12:9956002-9960642 (+)
A/J	ENSMUSG00195016656	lncRNA gene	Chr12:9969648-9974309 (+)
AKR/J	ENSMUSG00220028139	lncRNA gene	Chr12:10075008-10079658 (+)
BALB/cJ	ENSMUSG00180015344	lncRNA gene	Chr12:9962104-9966765 (+)
C3H/HeJ	ENSMUSG00175006014	lncRNA gene	Chr12:10037682-10042331 (+)
C57BL/6NJ	ENSMUSG00215026789	lncRNA gene	Chr12:9798233-9802894 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004852	lincRNA gene	Chr12:9484778-9489415 (+)
CAST/EiJ	ENSTCUG00005023028	lncRNA gene	Chr12:9536445-9541104 (+)
CBA/J	ENSMUSG00210007866	lncRNA gene	Chr12:10051992-10056641 (+)
DBA/2J	ENSMUSG00185021817	lncRNA gene	Chr12:9970144-9974793 (+)
FVB/NJ	ENSMUSG00205003594	lncRNA gene	Chr12:9776072-9780722 (+)
JF1/MsJ	ENSUMUG00000035661	lncRNA gene	Chr12:9874297-9879145 (+)
LP/J	ENSMUSG00230022439	lncRNA gene	Chr12:11775451-11780091 (+)
NOD/ShiLtJ	ENSMUSG00190013460	lncRNA gene	Chr12:11203447-11208103 (+)
NZO/HlLtJ	ENSMUSG00225030025	lncRNA gene	Chr12:13867334-13871974 (+)
PWK/PhJ	ENSLUMG00010017599	lncRNA gene	Chr12:9630904-9635560 (+)
SPRET/EiJ	ENSMSPG00010003392	lncRNA gene	Chr12:10462017-10466655 (+)
WSB/EiJ	ENSIUOG00005002451	lncRNA gene	Chr12:10002687-10007347 (+)

Homology

• Gene Tree
  4930519A11Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000097627 (Evidence)
• NCBI Gene
  74696

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097627	Ensembl Gene Model | MGI Sequence Detail	4665	C57BL/6J
transcript	ENSMUST00000181381	Ensembl | MGI Sequence Detail	1523	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573