4930442J19Rik Gene Detail

Summary

• Symbol
  4930442J19Rik
• Name
  RIKEN cDNA 4930442J19 gene
• Synonyms
  1700029E19Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1921910
  NCBI Gene: 74660
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:151143959-151157923 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 74.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921910	lncRNA gene	Chr2:151133656-151168673 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195022075	lncRNA gene	Chr2:148337012-148351304 (+)
AKR/J	ENSMUSG00220047140	lncRNA gene	Chr2:147661522-147675812 (+)
BALB/cJ	ENSMUSG00180045958	lncRNA gene	Chr2:147924273-147938565 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215033065	lncRNA gene	Chr2:148065276-148079566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044978	lncRNA gene	Chr2:148506789-148521075 (+)
DBA/2J	ENSMUSG00185049923	lncRNA gene	Chr2:148146699-148160989 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230036686	lncRNA gene	Chr2:149811211-149825493 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225005645	lncRNA gene	Chr2:157834860-157849150 (+)
PWK/PhJ	ENSLUMG00010047760	lncRNA gene	Chr2:147783811-147784423 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  4930442J19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930442J19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  1

• Ensembl
  ENSMUSG00000087609 (Evidence)
• NCBI Gene
  74660

Representative Sequences			Length	Strain/Species
genomic	74660	NCBI Gene Model | MGI Sequence Detail	13965	C57BL/6J
transcript	NR_040747	RefSeq | MGI Sequence Detail	1466	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1916743

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90

TSS for 4930442J19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr690	Chr2:151143932-151143955 (+)	-15 bp