4930426D05Rik MGI Mouse Gene Detail - MGI:1921894

Symbol

4930426D05Rik
Name

RIKEN cDNA 4930426D05 gene

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:1921894
NCBI Gene: 74644
Alliance

genome feature page
Transcription Start Sites

5 TSS

Sequence Map

Chr18:21784622-21789164 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 11.96 cM, cytoband A2
Mapping Data

2 experiments

SNPs within 2kb

102 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921894	protein coding gene	Chr18:21784505-21789164 (+)
129S1/SvImJ	ENSMUSG00200020144	lncRNA gene	Chr18:18793997-18798655 (+)
129S1/SvImJ	ENSMUSG00200019690	protein coding gene	Chr18:18794069-18798657 (+)
A/J	ENSMUSG00195002184	protein coding gene	Chr18:18940208-18944850 (+)
A/J	ENSMUSG00195002352	lncRNA gene	Chr18:18940080-18944737 (+)
AKR/J	ENSMUSG00220011736	protein coding gene	Chr18:18947126-18951715 (+)
AKR/J	ENSMUSG00220012049	lncRNA gene	Chr18:18947054-18951713 (+)
BALB/cJ	ENSMUSG00180003819	protein coding gene	Chr18:19401875-19406462 (+)
BALB/cJ	ENSMUSG00180004124	lncRNA gene	Chr18:19401803-19406460 (+)
C3H/HeJ	ENSMUSG00175004372	protein coding gene	Chr18:18887687-18892274 (+)
C3H/HeJ	ENSMUSG00175004621	lncRNA gene	Chr18:18887615-18892272 (+)
C57BL/6NJ	ENSMUSG00215003731	lncRNA gene	Chr18:18639432-18644089 (+)
C57BL/6NJ	ENSMUSG00215003498	protein coding gene	Chr18:18639560-18644091 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003055	antisense lncRNA gene	Chr18:17881252-17885904 (+)
CAST/EiJ	ENSTCUG00005015019	lncRNA gene	Chr18:18669373-18674028 (+)
CBA/J	ENSMUSG00210020571	lncRNA gene	Chr18:18939368-18944026 (+)
CBA/J	ENSMUSG00210020026	protein coding gene	Chr18:18939496-18944139 (+)
DBA/2J	ENSMUSG00185008216	lncRNA gene	Chr18:18896678-18901336 (+)
DBA/2J	ENSMUSG00185008096	protein coding gene	Chr18:18896806-18901449 (+)
FVB/NJ	ENSMUSG00205014293	protein coding gene	Chr18:18632236-18636878 (+)
FVB/NJ	ENSMUSG00205017630	lncRNA gene	Chr18:18632108-18636765 (+)
JF1/MsJ	ENSUMUG00000027698	lncRNA gene	Chr18:18973406-18978059 (+)
LP/J	ENSMUSG00230005386	protein coding gene	Chr18:20990197-20994785 (+)
LP/J	ENSMUSG00230006353	lncRNA gene	Chr18:20990125-20994783 (+)
NOD/ShiLtJ	ENSMUSG00190017369	lncRNA gene	Chr18:18711271-18715929 (+)
NOD/ShiLtJ	ENSMUSG00190017202	protein coding gene	Chr18:18711399-18716042 (+)
NZO/HlLtJ	ENSMUSG00225025773	lncRNA gene	Chr18:20913090-20917747 (+)
NZO/HlLtJ	ENSMUSG00225025351	protein coding gene	Chr18:20913218-20917749 (+)
PWK/PhJ	ENSLUMG00010016218	lncRNA gene	Chr18:19153162-19157815 (+)
SPRET/EiJ	ENSMSPG00010004921	lncRNA gene	Chr18:19051365-19056017 (+)
WSB/EiJ	ENSIUOG00005020206	lncRNA gene	Chr18:18718699-18723358 (+)

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Gene Tree

4930426D05Rik

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

599
Tissues

2
cDNA Data

3
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

45
RefSeq

4
UniProt

1

Ensembl

ENSMUSG00000043168 (Evidence)
NCBI Gene

74644

			Length	Strain/Species	Flank
genomic	74644	NCBI Gene Model \| MGI Sequence Detail	4543	C57BL/6J	± kb
transcript	NM_001271580	RefSeq \| MGI Sequence Detail	1636	C57BL/6
polypeptide	NP_001258509	RefSeq \| MGI Sequence Detail	105	C57BL/6

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UniProt

1 Sequence

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All nucleic 5

cDNA 3

Primer pair 1

Other 1

Microarray probesets 3

Summaries

All 16

Developmental Gene Expression 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:178498 Fagman H, et al., Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning. Dev Biol. 2011 Nov 15;359(2):163-75

TSS for 4930426D05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150231	Chr18:21784446-21784463 (+)	-167 bp
Tssr150232	Chr18:21784488-21784500 (+)	-128 bp
Tssr150233	Chr18:21784507-21784523 (+)	-107 bp
Tssr150234	Chr18:21785331-21785380 (+)	734 bp
Tssr150235	Chr18:21786378-21786388 (+)	1,761 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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