4930413E15Rik Gene Detail

Summary

• Symbol
  4930413E15Rik
• Name
  RIKEN cDNA 4930413E15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921877
  NCBI Gene: 74627
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:119090404-119099326 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  341 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921877	lncRNA gene	Chr5:119090358-119099807 (+)
129S1/SvImJ	ENSMUSG00200029228	lncRNA gene	Chr5:112838534-112847553 (+)
A/J	ENSMUSG00195012447	lncRNA gene	Chr5:112359385-112368401 (+)
AKR/J	ENSMUSG00220046104	lncRNA gene	Chr5:111852796-111861813 (+)
BALB/cJ	ENSMUSG00180041887	lncRNA gene	Chr5:112473988-112483011 (+)
C3H/HeJ	ENSMUSG00175031996	lncRNA gene	Chr5:114468794-114477703 (+)
C57BL/6NJ	ENSMUSG00215043434	lncRNA gene	Chr5:112495176-112504096 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006175	lincRNA gene	Chr5:111911812-111920348 (+)
CAST/EiJ	ENSTCUG00005041974	lncRNA gene	Chr5:111669303-111678426 (+)
CBA/J	ENSMUSG00210010263	lncRNA gene	Chr5:113219805-113228714 (+)
DBA/2J	ENSMUSG00185054268	lncRNA gene	Chr5:116284437-116293454 (+)
FVB/NJ	ENSMUSG00205052917	lncRNA gene	Chr5:112133322-112142180 (+)
JF1/MsJ	ENSUMUG00000054089	lncRNA gene	Chr5:119119281-119128296 (+)
LP/J	ENSMUSG00230049464	lncRNA gene	Chr5:120360908-120369925 (+)
NOD/ShiLtJ	ENSMUSG00190044234	lncRNA gene	Chr5:112166127-112174983 (+)
NZO/HlLtJ	ENSMUSG00225016709	lncRNA gene	Chr5:128039799-128048821 (+)
PWK/PhJ	ENSLUMG00010045051	lncRNA gene	Chr5:111018835-111027732 (+)
SPRET/EiJ	ENSMSPG00010046765	lncRNA gene	Chr5:114330792-114339562 (+)
WSB/EiJ	ENSIUOG00005019929	lncRNA gene	Chr5:114853851-114862754 (+)

Homology

• Gene Tree
  4930413E15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930413E15Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000107144 (Evidence)
• NCBI Gene
  74627

Representative Sequences			Length	Strain/Species
genomic	74627	NCBI Gene Model | MGI Sequence Detail	8923	C57BL/6J
transcript	NR_040694	RefSeq | MGI Sequence Detail	1290	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930413E15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1614	Chr5:119090387-119090400 (+)	-10 bp