4833421K07Rik Gene Detail

Summary

• Symbol
  4833421K07Rik
• Name
  RIKEN cDNA 4833421K07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921844
  NCBI Gene: 74594
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:54738345-54739735 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, cytoband B5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921844	lncRNA gene	Chr7:54738345-54739735 (+)
129S1/SvImJ	ENSMUSG00200009807	unclassified gene	Chr7:42325566-42326983 (+)
A/J	ENSMUSG00195011260	unclassified gene	Chr7:46373913-46375303 (+)
AKR/J	ENSMUSG00220011996	unclassified gene	Chr7:40655719-40657109 (+)
BALB/cJ	ENSMUSG00180011127	unclassified gene	Chr7:43232209-43233626 (+)
C3H/HeJ	ENSMUSG00175003783	unclassified gene	Chr7:43768671-43770088 (+)
C57BL/6NJ	ENSMUSG00215002156	unclassified gene	Chr7:43060116-43061506 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001885	unclassified gene	Chr7:57781625-57783069 (+)
CAST/EiJ	ENSTCUG00005024018	unclassified gene	Chr7:46638757-46640174 (+)
CBA/J	ENSMUSG00210017580	unclassified gene	Chr7:44143238-44144628 (+)
DBA/2J	ENSMUSG00185028958	unclassified gene	Chr7:47998685-48000102 (+)
FVB/NJ	ENSMUSG00205001624	unclassified gene	Chr7:43821186-43822576 (+)
JF1/MsJ	ENSUMUG00000017109	unclassified gene	Chr7:52819086-52820499 (+)
LP/J	ENSMUSG00230006863	unclassified gene	Chr7:53565180-53566570 (+)
NOD/ShiLtJ	ENSMUSG00190003904	unclassified gene	Chr7:44143940-44145330 (+)
NZO/HlLtJ	ENSMUSG00225010880	unclassified gene	Chr7:51743714-51745104 (+)
PWK/PhJ	ENSLUMG00010002487	unclassified gene	Chr7:42743953-42745366 (+)
SPRET/EiJ	ENSMSPG00010001705	unclassified gene	Chr7:42721171-42722564 (+)
WSB/EiJ	ENSIUOG00005006060	unclassified gene	Chr7:44447000-44448390 (+)

Homology

• Gene Tree
  4833421K07Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108519 (Evidence)
• NCBI Gene
  74594

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108519	Ensembl Gene Model | MGI Sequence Detail	1391	C57BL/6J
transcript	AK014746	GenBank | ENA | DDBJ | MGI Sequence Detail	1393	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573