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Zkscan1 Gene Detail
Summary
  • Symbol
    Zkscan1
  • Name
    zinc finger with KRAB and SCAN domains 1
  • Synonyms
    5930429A01Rik, 9130423L19Rik, 9230118B16Rik, KOX18, MGC:63357
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921820
    NCBI Gene: 74570
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:138083346-138106084 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 76.95 cM, cytoband G1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    142 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921820
 protein coding gene Chr5:138083312-138106084 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030253
 protein coding gene Chr5:142876128-142899172 (+)
A/J MGP_AJ_G0030221
 protein coding gene Chr5:136688315-136712461 (+)
AKR/J MGP_AKRJ_G0030153
 protein coding gene Chr5:141140521-141164663 (+)
BALB/cJ MGP_BALBcJ_G0030235
 protein coding gene Chr5:138058384-138081818 (+)
C3H/HeJ MGP_C3HHeJ_G0029948
 protein coding gene Chr5:141768925-141795480 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030682
 protein coding gene Chr5:148229878-148252586 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027900
 protein coding gene Chr5:130832578-130856500 (+)
CAST/EiJ MGP_CASTEiJ_G0029354
 protein coding gene Chr5:141154731-141177453 (+)
CBA/J MGP_CBAJ_G0029919
 protein coding gene Chr5:154094516-154122642 (+)
DBA/2J MGP_DBA2J_G0030067
 protein coding gene Chr5:136592235-136619300 (+)
FVB/NJ MGP_FVBNJ_G0030025
 protein coding gene Chr5:135759268-135785107 (+)
LP/J MGP_LPJ_G0030156
 protein coding gene Chr5:143396985-143422069 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030056
 protein coding gene Chr5:156928862-156952553 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030723
 protein coding gene Chr5:140972835-140995487 (+)
PWK/PhJ MGP_PWKPhJ_G0029068
 protein coding gene Chr5:135656158-135680369 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028904
 protein coding gene Chr5:138545112-138567786 (+)
WSB/EiJ MGP_WSBEiJ_G0029429
 protein coding gene Chr5:141668702-141691566 (+)



Homology
more
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
  • Synonyms
    KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33
  • Links
    NCBI Gene ID: 7586
    neXtProt AC: NX_P17029
    UniProt: P17029

  • Chr Location
    7q22.1; chr7:100015572-100045374 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    810
  • Tissues
    38
  • cDNA Data
    25
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029729 Ensembl Gene Model | MGI Sequence Detail 22739 C57BL/6J ±  kb
transcript ENSMUST00000019660 Ensembl | MGI Sequence Detail 8261 Not Applicable  
polypeptide ENSMUSP00000019660 Ensembl | MGI Sequence Detail 561 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 27
    Primer pair 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:1924361, MGI:1925002, MGI:2140946, MGI:2140960, MGI:2141340
References
more
  • Summaries
    All 43
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:257654 Memic F, et al., Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System. Gastroenterology. 2018 Feb;154(3):624-636
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory