9130015G15Rik Gene Detail

Summary

• Symbol
  9130015G15Rik
• Name
  RIKEN cDNA 9130015G15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921817
  NCBI Gene: 108167511
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:48772082-48809567 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1460 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921817	lncRNA gene	Chr7:48771685-48811906 (-)
129S1/SvImJ	ENSMUSG00200033362	lncRNA gene	Chr7:36398402-36436444 (-)
A/J	ENSMUSG00195050076	lncRNA gene	Chr7:40402630-40440111 (-)
AKR/J	ENSMUSG00220009314	lncRNA gene	Chr7:34692507-34730003 (-)
BALB/cJ	ENSMUSG00180044214	lncRNA gene	Chr7:37286352-37323824 (-)
C3H/HeJ	ENSMUSG00175044968	lncRNA gene	Chr7:37859887-37897934 (-)
C57BL/6NJ	ENSMUSG00215046145	lncRNA gene	Chr7:37069326-37106805 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023694	lncRNA gene	Chr7:40889391-40926916 (-)
CBA/J	ENSMUSG00210049923	lncRNA gene	Chr7:38170954-38208445 (-)
DBA/2J	ENSMUSG00185028710	lncRNA gene	Chr7:42069394-42107430 (-)
FVB/NJ	ENSMUSG00205049298	lncRNA gene	Chr7:37824705-37862196 (-)
JF1/MsJ	ENSUMUG00000055475	lncRNA gene	Chr7:46818537-46855920 (-)
LP/J	ENSMUSG00230051954	lncRNA gene	Chr7:47586020-47623491 (-)
NOD/ShiLtJ	ENSMUSG00190051256	lncRNA gene	Chr7:38164354-38201841 (-)
NZO/HlLtJ	ENSMUSG00225020826	lncRNA gene	Chr7:45696723-45734207 (-)
PWK/PhJ	ENSLUMG00010050594	lncRNA gene	Chr7:36939617-36977061 (-)
SPRET/EiJ	ENSMSPG00010046509	lncRNA gene	Chr7:36768347-36805453 (-)
WSB/EiJ	ENSIUOG00005031422	lncRNA gene	Chr7:38514998-38552497 (-)

Homology

• Gene Tree
  9130015G15Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000108950 (Evidence)
• NCBI Gene
  108167511

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108950	Ensembl Gene Model | MGI Sequence Detail	37486	C57BL/6J
transcript	ENSMUST00000208621	Ensembl | MGI Sequence Detail	1973	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9130015G15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72638	Chr7:48784022-48784029 (-)	25,541 bp